Detail publikačního výsledku

Architecture Model for Approximate Tandem Repeat Detection

MARTÍNEK, T.; LEXA, M.

Originální název

Architecture Model for Approximate Tandem Repeat Detection

Anglický název

Architecture Model for Approximate Tandem Repeat Detection

Druh

Stať ve sborníku mimo WoS a Scopus

Originální abstrakt

Algorithms for biological sequence analysis, such as approximate string matching or algorithms for identification of sequence patterns supporting specific structural elements, present good opportunities for hardware acceleration. Implementation of these algorithms often results in architectures based on multidimensional arrays of computing elements. Mapping effectively these computational structures on FPGAs remains one of the challenging problems. This paper focuses on a specific hardware architecture for detection of approximate tandem repeats in sequences. We show how to create a parametrized architecture model combined with an automatic technique that can determine appropriate circuit dimensions with respect to input task parameters and the target platform properties.

Anglický abstrakt

Algorithms for biological sequence analysis, such as approximate string matching or algorithms for identification of sequence patterns supporting specific structural elements, present good opportunities for hardware acceleration. Implementation of these algorithms often results in architectures based on multidimensional arrays of computing elements. Mapping effectively these computational structures on FPGAs remains one of the challenging problems. This paper focuses on a specific hardware architecture for detection of approximate tandem repeats in sequences. We show how to create a parametrized architecture model combined with an automatic technique that can determine appropriate circuit dimensions with respect to input task parameters and the target platform properties.

Klíčová slova

Approximate tandem repeat; Architecture model; Automated mapping; FPGA;

Klíčová slova v angličtině

Approximate tandem repeat; Architecture model; Automated mapping; FPGA;

Autoři

MARTÍNEK, T.; LEXA, M.

Rok RIV

2012

Vydáno

13.06.2011

Nakladatel

IEEE Computer Society

Místo

Santa Monica, California

ISBN

978-1-4577-1290-6

Kniha

22nd IEEE International Conference on Application-specific Systems, Architectures and Processors

Strany od

239

Strany do

242

Strany počet

4

URL

https://www.fit.vut.cz/research/publication/9671/

BibTex

@inproceedings{BUT76394,
  author="Tomáš {Martínek} and Matej {Lexa}",
  title="Architecture Model for Approximate Tandem Repeat Detection",
  booktitle="22nd IEEE International Conference on Application-specific Systems, Architectures and Processors",
  year="2011",
  pages="239--242",
  publisher="IEEE Computer Society",
  address="Santa Monica, California",
  doi="10.1109/ASAP.2011.6043277",
  isbn="978-1-4577-1290-6",
  url="https://www.fit.vut.cz/research/publication/9671/"
}

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