Detail publikačního výsledku

Feature-overlapper: The tool for DNA analysis overlap

HAVLÍK, J.; BRÁZDA, V.; STANĚK, K.; JEŽEK, M.; ŠŤASTNÝ, J.

Originální název

Feature-overlapper: The tool for DNA analysis overlap

Anglický název

Feature-overlapper: The tool for DNA analysis overlap

Druh

Článek WoS

Originální abstrakt

This contribution puts focus on a command line tool, which enables detection and analysis of overlapping regions between G-quadruplexes, R-loops and genome annotations for selected genomes. G-quadruplexes and R-loops are structures with high Guanine density, which is an important creation factor for both structures. Common regions (overlap) between both structures can provide us with better possibility to create precise model to detect R-loops and valuable insights when inspecting genome annotations with high R-loop density. The tool was used for multiple research projects and is under constant development bringing new features to the world of bioinformatics.

Anglický abstrakt

This contribution puts focus on a command line tool, which enables detection and analysis of overlapping regions between G-quadruplexes, R-loops and genome annotations for selected genomes. G-quadruplexes and R-loops are structures with high Guanine density, which is an important creation factor for both structures. Common regions (overlap) between both structures can provide us with better possibility to create precise model to detect R-loops and valuable insights when inspecting genome annotations with high R-loop density. The tool was used for multiple research projects and is under constant development bringing new features to the world of bioinformatics.

Klíčová slova

DNA; R-loop; G-quadruplex; Annotation

Klíčová slova v angličtině

DNA; R-loop; G-quadruplex; Annotation

Autoři

HAVLÍK, J.; BRÁZDA, V.; STANĚK, K.; JEŽEK, M.; ŠŤASTNÝ, J.

Rok RIV

2024

Vydáno

01.05.2023

Nakladatel

Elsevier

Místo

AMSTERDAM

ISSN

2665-9638

Periodikum

Software Impacts

Svazek

16

Číslo

5

Stát

Nizozemsko

Strany od

1

Strany do

4

Strany počet

4

URL

https://www.sciencedirect.com/science/article/pii/S2665963823000350?via%3Dihub

Plný text v Digitální knihovně

http://hdl.handle.net/11012/213660

BibTex

@article{BUT183463,
  author="Jan {Havlík} and Václav {Brázda} and Kamil {Staněk} and Michal {Ježek} and Jiří {Šťastný}",
  title="Feature-overlapper: The tool for DNA analysis overlap",
  journal="Software Impacts",
  year="2023",
  volume="16",
  number="5",
  pages="1--4",
  doi="10.1016/j.simpa.2023.100498",
  issn="2665-9638",
  url="https://www.sciencedirect.com/science/article/pii/S2665963823000350?via%3Dihub"
}

Dokumenty

1-s2.0-S2665963823000350-main