Detail publikačního výsledku

Clustering of Klebsiella Strains Based on Variability in Sequencing Data

BARTOŇ, V.; NYKRÝNOVÁ, M.; BEZDÍČEK, M.; LENGEROVÁ, M.; ŠKUTKOVÁ, H.

Originální název

Clustering of Klebsiella Strains Based on Variability in Sequencing Data

Anglický název

Clustering of Klebsiella Strains Based on Variability in Sequencing Data

Druh

Stať ve sborníku v databázi WoS či Scopus

Originální abstrakt

Genotyping is a method necessary to distinguish between strains of bacteria. Using whole sequences for analysis is a computational demanding and time-consuming approach. We establish a workflow to convert sequences to a numerical signal representing the variability of sequences. After segmentation and using only parts of the signals, they have still enough information to form a topologically according to the clustering structure.

Anglický abstrakt

Genotyping is a method necessary to distinguish between strains of bacteria. Using whole sequences for analysis is a computational demanding and time-consuming approach. We establish a workflow to convert sequences to a numerical signal representing the variability of sequences. After segmentation and using only parts of the signals, they have still enough information to form a topologically according to the clustering structure.

Klíčová slova

Genotyping; Klebsiella pneumoniae; Variability signal; Numerical processing;

Klíčová slova v angličtině

Genotyping; Klebsiella pneumoniae; Variability signal; Numerical processing;

Autoři

BARTOŇ, V.; NYKRÝNOVÁ, M.; BEZDÍČEK, M.; LENGEROVÁ, M.; ŠKUTKOVÁ, H.

Rok RIV

2020

Vydáno

13.04.2019

ISBN

978-3-030-17934-2

Kniha

Bioinformatics and Biomedical Engineering. IWBBIO 2019.

ISSN

0302-9743

Periodikum

Lecture Notes in Computer Science

Stát

Spolková republika Německo

Strany od

189

Strany do

199

Strany počet

11

BibTex

@inproceedings{BUT156910,
  author="Vojtěch {Bartoň} and Markéta {Jakubíčková} and Matěj {Bezdíček} and Martina {Lengerová} and Helena {Vítková}",
  title="Clustering of Klebsiella Strains Based on Variability in Sequencing Data",
  booktitle="Bioinformatics and Biomedical Engineering. IWBBIO 2019.",
  year="2019",
  journal="Lecture Notes in Computer Science",
  number="11466",
  pages="189--199",
  doi="10.1007/978-3-030-17935-9\{_}18",
  isbn="978-3-030-17934-2",
  issn="0302-9743"
}