Detail publikačního výsledku

Seasonal changes in microbial community composition in river water studied using 454-pyrosequencing

KAEVSKA, M.; VÍDEŇSKÁ, P.; SEDLÁŘ, K.; SLANÁ, I.

Originální název

Seasonal changes in microbial community composition in river water studied using 454-pyrosequencing

Anglický název

Seasonal changes in microbial community composition in river water studied using 454-pyrosequencing

Druh

Článek WoS

Originální abstrakt

The aims of this study were to determine the microbial community in five rivers in the proximity of a city in the Czech Republic using 454-pyrosequencing, as well as to assess seasonal variability over the course of 1 year and to identify the factors influencing the structure of bacterial communities. Samples from five rivers around the city of Brno were obtained during four seasons and analysed using 454 pyrosequencing of the 16S rRNA gene. The core composition of bacterial communities consisted of Actinobacteria, Bacteroidetes, Proteobacteria, Firmicutes, Fusobacteria, TM7 and others. Our approach enabled us to more closely study the correlation between the abundance of different families and environmental factors. Overall, Actinobacteria negatively correlated with phosphorus, sulphate, dissolved particle and chloride levels. In contrast, Proteobacteria positively correlated with sulphate, dissolved particle, chloride, dissolved oxygen and nitrite levels. Future work should focus on the dynamics of bacterial communities present in river water and their relation to the overall stability of the water ecosystem.

Anglický abstrakt

The aims of this study were to determine the microbial community in five rivers in the proximity of a city in the Czech Republic using 454-pyrosequencing, as well as to assess seasonal variability over the course of 1 year and to identify the factors influencing the structure of bacterial communities. Samples from five rivers around the city of Brno were obtained during four seasons and analysed using 454 pyrosequencing of the 16S rRNA gene. The core composition of bacterial communities consisted of Actinobacteria, Bacteroidetes, Proteobacteria, Firmicutes, Fusobacteria, TM7 and others. Our approach enabled us to more closely study the correlation between the abundance of different families and environmental factors. Overall, Actinobacteria negatively correlated with phosphorus, sulphate, dissolved particle and chloride levels. In contrast, Proteobacteria positively correlated with sulphate, dissolved particle, chloride, dissolved oxygen and nitrite levels. Future work should focus on the dynamics of bacterial communities present in river water and their relation to the overall stability of the water ecosystem.

Klíčová slova

River water; Pyrosequencing; Microbial community; Environmental factors

Klíčová slova v angličtině

River water; Pyrosequencing; Microbial community; Environmental factors

Autoři

KAEVSKA, M.; VÍDEŇSKÁ, P.; SEDLÁŘ, K.; SLANÁ, I.

Rok RIV

2017

Vydáno

05.04.2016

Nakladatel

Springer

ISSN

2193-1801

Periodikum

SpringerPlus

Svazek

5

Číslo

409

Stát

Spolková republika Německo

Strany od

1

Strany do

8

Strany počet

8

URL

http://springerplus.springeropen.com/articles/10.1186/s40064-016-2043-6

Plný text v Digitální knihovně

http://hdl.handle.net/11012/69199

BibTex

@article{BUT123502,
  author="Marija {Kaevska} and Petra {Vídeňská} and Karel {Sedlář} and Iva {Slaná}",
  title="Seasonal changes in microbial community composition in river water studied using 454-pyrosequencing",
  journal="SpringerPlus",
  year="2016",
  volume="5",
  number="409",
  pages="1--8",
  doi="10.1186/s40064-016-2043-6",
  issn="2193-1801",
  url="http://springerplus.springeropen.com/articles/10.1186/s40064-016-2043-6"
}

Dokumenty

s40064-016-2043-6