Navrhovaný projekt je koncipován jako výrazně mezioborový s přesahem do řady oblastí - zpracování signálů/obrazů, bioinformatiky, lékařských a biologických vědy. Sdružuje tedy několik témat, která jsou poměrně odlišná, avšak jejich základem je využívání inženýrských přístupů pro řešení celé řady vědeckých problémů (specifických či obecných).

FEKT-S-23-8196

Czech

Kolář Radim, doc. Ing., Ph.D. - principal person responsible
Bartoň Vojtěch, Ing. - fellow researcher
Bhogal Inderjeet, Mgr. - fellow researcher
Čejková Darina, Mgr. Bc., Ph.D. - fellow researcher
Čmiel Vratislav, Ing., Ph.D. - fellow researcher
Ezati Masoumeh - fellow researcher
Filipenská Marina, Ing., Ph.D. - fellow researcher
Hamza Ali - fellow researcher
Hanák Petr, Ing. - fellow researcher
Harabiš Vratislav, Ing., Ph.D. - fellow researcher
Hashemi Amir - fellow researcher
Hejč Jakub, Ing., Ph.D. - fellow researcher
Hrbotický Lukáš, Ing. - fellow researcher
Chmelík Jiří, Ing., Ph.D. - fellow researcher
Jakubíček Roman, Ing., Ph.D. - fellow researcher
Jakubíčková Markéta, Ing., Ph.D. - fellow researcher
Jiřík Radovan, doc. Ing., Ph.D. - fellow researcher
Jugas Robin, Ing., Ph.D. - fellow researcher
Kolářová Jana, doc. Ing., Ph.D. - fellow researcher
Kozumplík Jiří, doc. Ing., CSc. - fellow researcher

Department of Biomedical Engineering
- responsible department (30.3.2023 - not assigned)
Department of Biomedical Engineering
- internal (1.1.2023 - 31.12.2025)
Faculty of Electrical Engineering and Communication
- beneficiary (1.1.2023 - 31.12.2025)

2. Deep Learning-Enhanced Ultrasound Analysis: Classifying Breast Tumors Using Segmentation and Feature Extraction. PISCATAWAY: IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC, 2025. p. 83528-83541.
Detail

SCHWARZEROVÁ, J.; OLEŠOVÁ, D.; ŠABATOVÁ, K.; KVASNIČKA, A.; KOŠTOVAL, A.; FRIEDECKÝ, D.; SEKORA, J.; DLUHÁ, J.; PROVAZNÍK, V.; POPELINSKY, L.; WECKWERTH, W. Enhanced metabolomic predictions using concept drift analysis: identification and correction of confounding factors. Bioinformatics Advances, 2025, vol. 5, no. 1, p. 1-12. ISSN: 2635-0041.
Detail

SONI, R.; PANKAJ, V.; ROY, S.; KHAINAR, A.; SHAH, J. Upregulation of the PI3K/AKT and Nrf2 Pathways by the DPP‑4 Inhibitor Sitagliptin Renders Neuroprotection in Chemically Induced Parkinson’s Disease Mouse Models. ACS CHEM NEUROSCI, 2025, vol. 2025, no. 16, p. 1402-1417. ISSN: 1948-7193.
Detail

ŘEDINA, R.; HEJČ, J.; FILIPENSKÁ, M.; STÁREK, Z. Analyzing the performance of biomedical time-series segmentation with electrophysiology data. Scientific Reports, 2025, vol. 15, no. 1, p. 1-15. ISSN: 2045-2322.
Detail

SCHWARZEROVÁ, J.; MATE, E.; IDKOWIAK, J.; OLEŠOVÁ, D.; KVASNIČKA, A.; DOBESOVA, D.; FRIEDECKÝ, D.; PROVAZNÍK, V.; SKARDA, J.; WECKWERTH, W.; NÄGELE, T. MInfer: Bridging MetaboAnalyst and Jacobian analysis for metabolomic networks. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 2025, vol. 263, no. 1, p. 1-8. ISSN: 0169-2607.
Detail

BALZEKAS, I.; TRZASKO, J.; YU, G.; RICHNER, T.; MÍVALT, F.; SLADKÝ, V.; GREGG, N.; VAN GOMPEL, J.; MILLER, K.; CROARKIN, P.; KŘEMEN, V.; WORRELL, G. Method for cycle detection in sparse, irregularly sampled, long-term neuro-behavioral timeseries: Basis pursuit denoising with polynomial detrending of long-term, inter-ictal epileptiform activity. PLoS Computational Biology, 2024, vol. 20, no. 4, p. 1-25. ISSN: 1553-7358.
Detail

HOLÍKOVÁ, K.; SELINGEROVÁ, I.; POSPÍŠIL, P.; BULÍK, M.; HYNKOVÁ, L.; KALOUSKOVÁ, I.; HNIDÁKOVÁ, L.; BURKOŇ, P.; SLÁVIK, M.; ŠÁNA, J.; HOLEČEK, T.; VANÍČEK, J.; ŠLAMPA, P.; JANČÁLEK, R.; KAZDA, T. Hippocampal subfield volumetric changes after radiotherapy for brain metastases. Neuro-Oncology Advances, 2024, vol. 6, no. 1, p. 1-9. ISSN: 2632-2498.
Detail

SNOPKOVÁ, K.; SEDLÁŘ, K.; NOVÁKOVÁ, D.; STAŇKOVÁ, E.; SEDLÁČEK, I.; ŠEDO, O.; HOLÁ, V. Pseudomonas rossensis sp. nov., a novel psychrotolerant species produces antimicrobial agents targeting resistant clinical isolates of Pseudomonas aeruginosa. Current Research in Microbial Sciences, 2025, vol. 8, no. 1, ISSN: 2666-5174.
Detail

VAIBAROVA, V.; KRÁLOVÁ, S.; PALÍKOVÁ, M.; SCHWARZEROVÁ, J.; ČEJKOVÁ, D.; ČÍŽEK, A. Antibiotická rezistence a struktura populace Flavobacterium psychrophilum v chovech lososovitých ryb v České republice. Veterinářství. Profi Press, s.r.o. GJ, 2025, roč. 75, č. 1, s. 36-41. ISSN: 0506-8231.
Detail

PODRAZKÝ, D. Laboratory database for bacterial sample data cataloguing in the hospital environment. In Proceedings II of the 30th Conference STUDENT EEICT 2024: Selected papers. 1. Brno: Brno University of Technology, Faculty of Electrical Engineering and Communication, 2024. p. 16-19. ISBN: 978-80-214-6230-4.
Detail

SCHWARZEROVÁ, J.; PIHEROVA, L.; POLAKOVIČOVÁ, P.; GUZIUROVA, S.; KUTILKOVA, E.; ADAMOVA, M.; KREBSOVA, A.; PROVAZNÍK, V.; WECKWERTH, W.; SITKOVA, R. Polygenic Risk Score Simulation: A case study of sudden cardiovascular diseases derived from literature insights. In 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). 2024. p. 5080-5087. ISBN: 979-8-3503-8622-6.
Detail

NEJEZCHLEBOVÁ, J.; RYCHLÍK, I.; SCHWARZEROVÁ, J. Bacterial Identifier: Accelerating Bacterial Genome Detection. Proceedings I of the 30th Conference STUDENT EEICT 2024. 1. 2024. p. 97-100. ISBN: 978-80-214-6231-1.
Detail

VARGOVÁ, E.; NĚMCOVÁ, A. Improved systolic peak detection in photoplethysmography signals: focus on atrial fibrillation. Kladno: 2024.
Detail

Vaishali Pankaj, Inderjeet Bhogal, Sudeep Roy. Unveiling HDAC8 antagonists for breast cancer therapy via molecular modeling. In 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE-International Conference on Bioinformatics and Biomedicine (BIBM). Lisbon, Portugal: IEEE, 2025. p. 852-855. ISBN: 979-8-3503-8622-6. ISSN: 2156-1133.
Detail

BHOGAL, I.; PANKAJ, V.; ROY, S. Therapeutic strategy to identify potential RAGE inhibitors against Alzheimer’s disease: An in-silico approach. In 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE-International Conference on Bioinformatics and Biomedicine (BIBM). Lisbon, Portugal: IEEE International Conference on Bioinformatics and Biomedicine (BIBM) 2024, 2025. p. 6061-6068. ISBN: 979-8-3503-8622-6. ISSN: 2156-1133.
Detail

NOHEL, M.; MÉZL, M.; VÁLEK, V.; DOSTÁL, M.; CHMELÍK, J. Method Comparison for Bone Density in Multiple Myeloma Patients. Lékař a technika, 2024, vol. 54, no. 3, p. 94-100. ISSN: 0301-5491.
Detail

KUČERA, J.; FUKALOVÁ, P.; STŘEDOVÁ, H.; BLECHA, M.; JAKUBÍČEK, R.; CHMELÍK, J.; PODHRÁZSKÁ, J.; STŘEDA, T. Evaluation of the Spatial Structure of Windbreaks from Digital Photography. Journal of Ecological Engineering, 2024, vol. 25, no. 10, p. 381-391. ISSN: 2299-8993.
Detail

VÍTKOVÁ, H.; NYKRÝNOVÁ, M.; BEZDÍČEK, M.; LENGEROVÁ, M. Unveiling Diversity: Classification of Klebsiella Pneumoniae Plasmids from Long-read Assemblies. In Lecture Notes in Bioinformatics. Lecture Notes in Computer Science. 14849. Springer Nature, 2024. p. 314-328. ISBN: 978-3-031-64636-2. ISSN: 1611-3349.
Detail

DATHAN-STUMPF, A.; STEPAN, H.; ORSÁGOVÁ, E.; JAKUBÍČEK, R.; BERBÉE, C.; SEIDENSPINNER, M.; KOLÁŘ, R.; RAUSCHER, F. Pregnancy induces retinal microvascular changes indicating cardio-metabolic stress. Pregnancy Hypertension, 2024, vol. 35, no. March 2024, p. 30-31. ISSN: 2210-7789.
Detail

POSPÍŠILOVÁ, P.; ČEJKOVÁ, D.; BURŠÍKOVÁ, P.; FEDROVÁ, P.; MIKALOVA, L.; NAJT, D.; TOM, N.; HISGEN, L.; LUEERT, S.; LUMEIJ, J.; AGREN, E.; KNAUF, S.; ŠMAJS, D. The hare syphilis agent is related to, but distinct from, the treponeme causing rabbit syphilis. PLOS ONE, 2024, vol. 19, no. 8, p. 1-15. ISSN: 1932-6203.
Detail

Responsibility: Kolář Radim, doc. Ing., Ph.D.