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Project detail
Duration: 1.3.2023 — 28.2.2026
Funding resources
Vysoké učení technické v Brně - Vnitřní projekty VUT
- whole funder (1. 1. 2023 - 31. 12. 2024)
On the project
Navrhovaný projekt je koncipován jako výrazně mezioborový s přesahem do řady oblastí - zpracování signálů/obrazů, bioinformatiky, lékařských a biologických vědy. Sdružuje tedy několik témat, která jsou poměrně odlišná, avšak jejich základem je využívání inženýrských přístupů pro řešení celé řady vědeckých problémů (specifických či obecných).
Mark
FEKT-S-23-8196
Default language
Czech
People responsible
Kolář Radim, doc. Ing., Ph.D. - principal person responsibleBartoň Vojtěch, Ing. - fellow researcherBhogal Inderjeet, Mgr. - fellow researcherČejková Darina, Mgr. Bc., Ph.D. - fellow researcherČmiel Vratislav, Ing., Ph.D. - fellow researcherEzati Masoumeh - fellow researcherFilipenská Marina, Ing., Ph.D. - fellow researcherHamza Ali - fellow researcherHanák Petr, Ing. - fellow researcherHarabiš Vratislav, Ing., Ph.D. - fellow researcherHashemi Amir - fellow researcherHejč Jakub, Ing., Ph.D. - fellow researcherHrbotický Lukáš, Ing. - fellow researcherChmelík Jiří, Ing., Ph.D. - fellow researcherJakubíček Roman, Ing., Ph.D. - fellow researcherJakubíčková Markéta, Ing., Ph.D. - fellow researcherJiřík Radovan, doc. Ing., Ph.D. - fellow researcherJugas Robin, Ing., Ph.D. - fellow researcherKolářová Jana, doc. Ing., Ph.D. - fellow researcherKozumplík Jiří, doc. Ing., CSc. - fellow researcher
Units
Department of Biomedical Engineering- responsible department (30.3.2023 - not assigned)Department of Biomedical Engineering- internal (1.1.2023 - 31.12.2025)Faculty of Electrical Engineering and Communication- beneficiary (1.1.2023 - 31.12.2025)
Results
VAIBAROVA, V.; KRÁLOVÁ, S.; PALÍKOVÁ, M.; SCHWARZEROVÁ, J.; ČEJKOVÁ, D.; ČÍŽEK, A. Antibiotická rezistence a struktura populace Flavobacterium psychrophilum v chovech lososovitých ryb v České republice. Veterinářství. Profi Press, s.r.o. GJ, 2025, roč. 75, č. 1, s. 36-41. ISSN: 0506-8231.Detail
PODRAZKÝ, D. Laboratory database for bacterial sample data cataloguing in the hospital environment. In Proceedings II of the 30th Conference STUDENT EEICT 2024: Selected papers. 1. Brno: Brno University of Technology, Faculty of Electrical Engineering and Communication, 2024. p. 16-19. ISBN: 978-80-214-6230-4.Detail
SCHWARZEROVÁ, J.; PIHEROVA, L.; POLAKOVIČOVÁ, P.; GUZIUROVA, S.; KUTILKOVA, E.; ADAMOVA, M.; KREBSOVA, A.; PROVAZNÍK, V.; WECKWERTH, W.; SITKOVA, R. Polygenic Risk Score Simulation: A case study of sudden cardiovascular diseases derived from literature insights. In 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). 2024. p. 5080-5087. ISBN: 979-8-3503-8622-6.Detail
NEJEZCHLEBOVÁ, J.; RYCHLÍK, I.; SCHWARZEROVÁ, J. Bacterial Identifier: Accelerating Bacterial Genome Detection. Proceedings I of the 30th Conference STUDENT EEICT 2024. 1. 2024. p. 97-100. ISBN: 978-80-214-6231-1.Detail
Vaishali Pankaj, Inderjeet Bhogal, Sudeep Roy. Unveiling HDAC8 antagonists for breast cancer therapy via molecular modeling. In 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE-International Conference on Bioinformatics and Biomedicine (BIBM). Lisbon, Portugal: IEEE, 2025. p. 852-855. ISBN: 979-8-3503-8622-6. ISSN: 2156-1133.Detail
BHOGAL, I.; PANKAJ, V.; ROY, S. Therapeutic strategy to identify potential RAGE inhibitors against Alzheimer’s disease: An in-silico approach. In 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE-International Conference on Bioinformatics and Biomedicine (BIBM). Lisbon, Portugal: IEEE International Conference on Bioinformatics and Biomedicine (BIBM) 2024, 2025. p. 6061-6068. ISBN: 979-8-3503-8622-6. ISSN: 2156-1133.Detail
NOHEL, M.; MÉZL, M.; VÁLEK, V.; DOSTÁL, M.; CHMELÍK, J. Method Comparison for Bone Density in Multiple Myeloma Patients. Lékař a technika, 2024, vol. 54, no. 3, p. 94-100. ISSN: 0301-5491.Detail
KUČERA, J.; FUKALOVÁ, P.; STŘEDOVÁ, H.; BLECHA, M.; JAKUBÍČEK, R.; CHMELÍK, J.; STŘEDA, T.; PODHRÁZSKÁ, J. Evaluation of the Spatial Structure of Windbreaks from Digital Photography. Journal of Ecological Engineering, 2024, vol. 25, no. 10, p. 381-391. ISSN: 2299-8993.Detail
VÍTKOVÁ, H.; NYKRÝNOVÁ, M.; BEZDÍČEK, M.; LENGEROVÁ, M. Unveiling Diversity: Classification of Klebsiella Pneumoniae Plasmids from Long-read Assemblies. In Lecture Notes in Bioinformatics. Lecture Notes in Computer Science. 14849. Springer Nature, 2024. p. 314-328. ISBN: 978-3-031-64636-2. ISSN: 1611-3349.Detail
POSPÍŠILOVÁ, P.; ČEJKOVÁ, D.; BURŠÍKOVÁ, P.; FEDROVÁ, P.; MIKALOVA, L.; NAJT, D.; TOM, N.; HISGEN, L.; LUEERT, S.; LUMEIJ, J.; AGREN, E.; KNAUF, S.; ŠMAJS, D. The hare syphilis agent is related to, but distinct from, the treponeme causing rabbit syphilis. PLOS ONE, 2024, vol. 19(8), no. e0307196, ISSN: 1932-6203.Detail
MACHELOVÁ, A.; DADEJOVÁ, M.; FRANEK, M.; MOUGEOT, G.; SIMON, L.; LE GOFF, S.; DUC, C.; BASSLER, J.; DEMKO, M.; SCHWARZEROVÁ, J.; DESSET, S.; PROBST, A.; DVOŘÁČKOVÁ, M. The histone chaperones ASF1 and HIRA are required for telomere length and 45S rDNA copy number homeostasis. PLANT JOURNAL, 2024, vol. 0, no. 0, p. 1-17. ISSN: 0960-7412.Detail
VAIBAROVA, V.; KRÁLOVÁ, S.; PALÍKOVÁ, M.; SCHWARZEROVÁ, J.; NEJEZCHLEBOVÁ, J.; ČEJKOVÁ, D.; ČÍŽEK, A. Genetic and phenotypic diversity of Flavobacterium psychrophilum isolates from Czech salmonid fish farms. BMC MICROBIOLOGY, 2024, vol. 24, no. 1, p. 1-15. ISSN: 1471-2180.Detail
ŠKRVÁŇ, A.; HUDEC, R.; ŠTUREKOVÁ, J.; HARABIŠ, V.; CHMELÍK, J. Radon Transform-Based 3D Reconstruction of Brain Vasculature from 2D Angiography. In 2024 ELEKTRO (ELEKTRO). ELECTRO2022. IEEE, 2024. p. 1-6. ISBN: 979-8-3503-7235-9. ISSN: 2691-0616.Detail
NYKRÝNOVÁ, M.; BEZDÍČEK, M.; LENGEROVÁ, M.; VÍTKOVÁ, H. Exploring DNA Methylation Patterns in the Core Genome of Klebsiella pneumoniae. In Lecture Notes in Bioinformatics. Lecture Notes in Computer Science. 14849. Springer Nature, 2024. p. 140-152. ISBN: 978-3-031-64636-2. ISSN: 1611-3349.Detail
SCHWARZEROVÁ, J.; RAJASEKARAN, L.; JUREČKOVÁ, K.; NEJEZCHLEBOVÁ, J.; VARGA, M.; PROVAZNÍK, V.; WECKWERTH, W.; ČEJKOVÁ, D. Visualizing Horizontal Gene Transfer Detection in Phylogenetically Divergent Bacteria. In Lecture Notes in Bioinformatics. Lecture Notes in Computer Science. 14849. Springer Nature, 2024. p. 267-277. ISBN: 978-3-031-64636-2. ISSN: 1611-3349.Detail
JUGAS, R.; VÍTKOVÁ, H. ProcaryaSV: structural variation detection pipeline for bacterial genomes using short-read sequencing. BMC BIOINFORMATICS, 2024, vol. 25, no. 1, p. 1-13. ISSN: 1471-2105.Detail
FIALOVÁ, A.; SEDLÁŘ, K. BacSeqer: Read simulator for bacterial RNA-Seq. In Proceedings II of the 30 th Conference STUDENT EEICT 2024. 1. 2024. p. 12-15. ISBN: 978-80-214-6230-4.Detail
HEŘMÁNKOVÁ, K.; SEDLÁŘ, K. Co-expression analysis of small RNAs and untranslated regions in Rhodospirillum rubrum. Proceedings I of the 30 th Conference STUDENT EEICT 2024. 1. 2024. p. 113-116. ISBN: 978-80-214-6231-1.Detail
NOHEL, M.; CHMELÍK, J. Calculation of Bone Mineral Density from Dual-energy CT and its Application on Patient with Multiple Myeloma. In Proceedings II of the 30st Conference STUDENT EEICT 2024: Selected papers. Proceedings II of the Conference STUDENT EEICT. 1. Brno: Brno University of Technology, Faculty of Electrical Engineering and Communication, 2024. p. 129-133. ISBN: 978-80-214-6230-4. ISSN: 2788-1334.Detail
ČURILLOVÁ, M.; NOHEL, M. Deep learning model for segmentation of trabecular tissue on CT data of the lumbar spine. In Proceedings II of the 30st Conference STUDENT EEICT 2024: Selected papers. Proceedings II of the Conference STUDENT EEICT. 1. Brno, Czech Republic: Brno University of Technology, Faculty of Electrical Engineering and Communication, 2024. p. 8-11. ISBN: 978-80-214-6230-4. ISSN: 2788-1334.Detail
Responsibility: Kolář Radim, doc. Ing., Ph.D.