Detail publikačního výsledku

Alignment - free Visualization of Metagenomic Data by Genomic Signal Processing

KUPKOVÁ, K.

Originální název

Alignment - free Visualization of Metagenomic Data by Genomic Signal Processing

Anglický název

Alignment - free Visualization of Metagenomic Data by Genomic Signal Processing

Druh

Stať ve sborníku v databázi WoS či Scopus

Originální abstrakt

Alignment-free visualization of metagenomic data without prior knowledge about organism composition is one of the major issues in metagenomic bioinformatics. Such a visualization method must place fragments from one organism in close proximity to each other, be reproducible and with rapidly increasing amount of data also work ideally in linear time. A novel technique fulfilling all of these requirements is introduced in this paper. The method is based on transformation of genomic sequence into phase signal representation with extraction of three Hjorth’s descriptors forming three dimensional space for visualization.

Anglický abstrakt

Alignment-free visualization of metagenomic data without prior knowledge about organism composition is one of the major issues in metagenomic bioinformatics. Such a visualization method must place fragments from one organism in close proximity to each other, be reproducible and with rapidly increasing amount of data also work ideally in linear time. A novel technique fulfilling all of these requirements is introduced in this paper. The method is based on transformation of genomic sequence into phase signal representation with extraction of three Hjorth’s descriptors forming three dimensional space for visualization.

Klíčová slova

metagenome; numerical representation; visualization; Hjorth’s descriptors

Klíčová slova v angličtině

metagenome; numerical representation; visualization; Hjorth’s descriptors

Autoři

KUPKOVÁ, K.

Rok RIV

2017

Vydáno

28.04.2016

Nakladatel

Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních

Místo

Brno

ISBN

978-80-214-5350-0

Kniha

Proceedings of the 22nd Conference STUDENT EEICT 2016

Strany od

247

Strany do

249

Strany počet

3

BibTex

@inproceedings{BUT124580,
  author="Kristýna {Kupková}",
  title="Alignment - free Visualization of Metagenomic Data by Genomic Signal Processing",
  booktitle="Proceedings of the 22nd Conference STUDENT EEICT 2016",
  year="2016",
  pages="247--249",
  publisher="Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních",
  address="Brno",
  isbn="978-80-214-5350-0"
}