Detail publikačního výsledku

Relationship of bacteria using comparison of whole genome sequences in frequency domain

KUBICOVÁ, V.; PROVAZNÍK, I.

Originální název

Relationship of bacteria using comparison of whole genome sequences in frequency domain

Anglický název

Relationship of bacteria using comparison of whole genome sequences in frequency domain

Druh

Článek Scopus

Originální abstrakt

We propose a new method for determination of relationship of bacteria based on whole genome data. The method compares whole genomic DNA sequences in frequency domain. The proposed method was tested on phyla level on 168 bacteria from four phyla and on order level – 121 bacteria from phylum Proteobacteria, class Gammaproteobacteria were classified. The classification on both levels was successful in more than 82%.

Anglický abstrakt

We propose a new method for determination of relationship of bacteria based on whole genome data. The method compares whole genomic DNA sequences in frequency domain. The proposed method was tested on phyla level on 168 bacteria from four phyla and on order level – 121 bacteria from phylum Proteobacteria, class Gammaproteobacteria were classified. The classification on both levels was successful in more than 82%.

Klíčová slova

relationship of bacteria, whole genome comparison, DNA spectrogram

Klíčová slova v angličtině

relationship of bacteria, whole genome comparison, DNA spectrogram

Autoři

KUBICOVÁ, V.; PROVAZNÍK, I.

Rok RIV

2015

Vydáno

02.06.2014

Nakladatel

Springer International Publishing

ISSN

2194-5357

Periodikum

Advances in Intelligent Systems and Computing

Svazek

283

Číslo

6

Stát

Švýcarská konfederace

Strany od

397

Strany do

408

Strany počet

12

BibTex

@article{BUT107919,
  author="Vladimíra {Kubicová} and Valentýna {Provazník}",
  title="Relationship of bacteria using comparison of whole genome sequences in frequency domain",
  journal="Advances in Intelligent Systems and Computing",
  year="2014",
  volume="283",
  number="6",
  pages="397--408",
  doi="10.1007/978-3-319-06593-9\{_}35",
  issn="2194-5357"
}