Branch Details

Bioinformatics and Biocomputing

Original title in Czech: Bioinformatika a biocomputingFITAbbreviation: MBIAcad. year: 2020/2021

Programme: Information Technology

Length of Study: 2 years

Accredited from: 1.1.2005Accredited until: 31.12.2024

Profile

Students will get acquainted with the advanced algorithms for processing, analysis and presentation of biological data, in particular genomic and proteomic data. In addition to the use of the standard algorithms, students will be able to develop new algorithms in this area. Students will become familiar with the concepts of molecular genetics and with standard biological databases. Students will be able to communicate with biologists and work in multidisciplinary teams. The knowledge acquired by studying the biological systems will be used for understanding bio-inspired computing systems. Students will get acquainted with the principles of natural computing, in particular, with evolutionary design, evolvable systems, DNA computing, fuzzy computing, neural computing and unconventional computing. Students will be able to integrate the bio-inspired principles into existing systems in order to improve their efficiency.

Key learning outcomes

Student of the branch acquire deeper knowledge in the bioinformatics and natural computing. This give him knowledge and skills base to analyse, design and verification of problems of biological databases as well as use, design, implement and accelerate algorithms for analysis of the biological data. He/she is able to apply natural computing algorithms (evolutionary algorithms, artificial neural networks, fuzzy systems etc.) in the complex design and optimization problems.

Guarantor


Course structure diagram with ECTS credits

1. year of study, winter semester
AbbreviationTitleL.Cr.Com.Compl.Hr. rangeGr.Op.
BIOBiometric Systemscs, en5Compulsoryyes
MATMathematical Structures in Computer Sciencecs, en5Compulsoryno
BC_MOG1Molecular Genetics Ics3Compulsoryyes
PDBAdvanced Database Systemscs, en5Compulsoryyes
TINTheoretical Computer Sciencecs7Compulsoryyes
1. year of study, summer semester
AbbreviationTitleL.Cr.Com.Compl.Hr. rangeGr.Op.
BIFBioinformaticscs5Compulsoryyes
BINBio-Inspired Computerscs5Compulsoryyes
PRLParallel and Distributed Algorithmscs5Compulsoryyes
PP1Project Practice 1cs, en5Electiveyes
2. year of study, winter semester
AbbreviationTitleL.Cr.Com.Compl.Hr. rangeGr.Op.
PBIAdvanced Bioinformaticscs4Compulsoryyes
SEPSemester Projectcs, en5Compulsoryyes
SFCSoft Computingcs5Compulsoryyes
THEGame Theorycs5Compulsoryyes
ZZNKnowledge Discovery in Databasescs5Compulsoryyes
PP2Project Practice 2cs5Electiveyes
2. year of study, summer semester
AbbreviationTitleL.Cr.Com.Compl.Hr. rangeGr.Op.
DIPMaster's Thesiscs, en13Compulsoryyes
Any year of study, winter semester
AbbreviationTitleL.Cr.Com.Compl.Hr. rangeGr.Op.
HSCHardware/Software Codesigncs, en5Compulsory-optionalHardware and Networksyes
PCSAdvanced Digital Systemscs5Compulsory-optionalHardware and Networksyes
JA3Conversation through Hot Current Issuescs, en3Compulsory-optionalSocial Courseyes
FCEEnglish: Practical Course of Business Conversation and Presentationcs, en3Compulsory-optionalSocial Courseyes
AEUEnglish for Europecs, en3Compulsory-optionalSocial Courseyes
FITHistory and Philosophy of Technologycs, en3Compulsory-optionalSocial Courseyes
FIKPhilosophy and the Culturecs, en3Compulsory-optionalSocial Courseno
HKOCommunication and Presentation Skillscs, en3Compulsory-optionalSocial Courseyes
HVRLeadership and Time Managementcs, en3Compulsory-optionalSocial Courseyes
PRMFundamentals of Lawcs, en3Compulsory-optionalSocial Courseyes
RETRhetoriccs, en3Compulsory-optionalSocial Courseyes
AGSAgents and Multiagent Systemscs5Compulsory-optionalModern Artificial Intelligenceyes
SINIntelligent Systemscs5Compulsory-optionalModern Artificial Intelligenceyes
BISInformation System Securitycs5Compulsory-optionalOperating Systems and Securityyes
ZPJaNatural Language Processing (in English)en5Compulsory-optionalData and Signal Processingno
AISInformation Systems Analysis and Designcs5Electiveyes
AVSComputation Systems Architecturescs5Electiveyes
BMSWireless and Mobile Networkscs5Electiveyes
EIPEconomics of Information Productscs5Electiveno
GZNGraphical and Sound Interfaces and Standardscs5Electiveyes
GJAGraphical User Interfaces in Javacs, en5Electiveyes
GUXGraphical User Interfaces in X Window Systemcs5Electiveno
GMUGraphic and Multimedia Processorscs5Electiveyes
GALGraph Algorithmscs, en5Electiveyes
PGRComputer Graphicscs, en5Electiveyes
POVaComputer Vision (in English)en5Electiveyes
PGPaAdvanced Computer Graphics (in English)en5Electiveyes
PKSAdvanced Communication Systemscs5Electiveyes
PDIDistributed Application Environmentcs, en5Electiveyes
ROBaRobotics (in English)en5Electiveyes
SEMSensors and Measurementcs5Electiveyes
C1PImplementing Cisco IP Routing (ROUTE)cs5Electiveyes
SAVStatic Analysis and Verificationcs5Electiveyes
SRIStrategic Management of Information Systemscs5Electiveyes
RTSaReal-Time Systems (in English)en5Electiveyes
TAMaApplication Development for Mobile Devices (in English)en5Electiveyes
VYPaCompiler Construction (in English)en5Electiveyes
VINComputer Artcs5Electiveyes
ZPXProfessional Practice, Abroaden5Electiveyes
Any year of study, summer semester
AbbreviationTitleL.Cr.Com.Compl.Hr. rangeGr.Op.
NAVDesign of Embedded Systemscs5Compulsory-optionalHardware and Networksyes
PPPPractical Parallel Programmingcs5Compulsory-optionalHardware and Networksyes
PDSData Communications, Computer Networks and Protocolscs, en5Compulsory-optionalHardware and Networksyes
JA3Conversation through Hot Current Issuescs, en3Compulsory-optionalSocial Courseyes
AEUEnglish for Europecs, en3Compulsory-optionalSocial Courseyes
FITHistory and Philosophy of Technologycs, en3Compulsory-optionalSocial Courseno
FIKPhilosophy and the Culturecs, en3Compulsory-optionalSocial Courseyes
HKOCommunication and Presentation Skillscs, en3Compulsory-optionalSocial Courseyes
HVRLeadership and Time Managementcs, en3Compulsory-optionalSocial Courseyes
PRMFundamentals of Lawcs, en3Compulsory-optionalSocial Courseyes
RETRhetoriccs, en3Compulsory-optionalSocial Courseyes
EVOApplied Evolutionary Algorithmscs5Compulsory-optionalModern Artificial Intelligenceyes
SNTSimulation Tools and Techniquescs5Compulsory-optionalModern Artificial Intelligenceyes
KRYCryptographycs5Compulsory-optionalOperating Systems and Securityyes
NSBProjecting, Administration and Securitycs5Compulsory-optionalOperating Systems and Securityyes
POSAdvanced Operating Systemscs5Compulsory-optionalOperating Systems and Securityno
KKOData Coding and Compressioncs5Compulsory-optionalData and Signal Processingyes
ZRESpeech Signal Processingcs, en5Compulsory-optionalData and Signal Processingyes
MBAModel-Based Analysiscs5Electiveyes
BZASecure Hardware Devicescs5Electiveyes
CSOaCCNA Cybersecurity Operations (in English)en5Electiveyes
DFAaDigital Forensics (in English)en5Electiveyes
DJADynamic Languagescs5Electiveyes
FLPFunctional and Logic Programmingcs5Electiveyes
FVSFunctional Verification of Digital Systemscs5Electiveyes
FYOPhysical Opticscs, en5Electiveyes
GISGeographical Information Systemscs5Electiveno
WAPInternet Applicationscs5Electiveyes
LOGLogiccs5Electiveyes
MPRProject Managementcs5Electiveyes
MPC-MATMatrices and Tensors Calculuscs5Electiveyes
MULMultimediacs, en5Electiveyes
OPMOptimizationcs4Electiveyes
PISAdvanced Information Systemscs5Electiveyes
PMAProject Managercs5Electiveyes
SLOaComplexity (in English)en5Electiveyes
SSPStochastic Processescs4Electiveyes
MPC-SYSSystems Biologycs5Electiveyes
SPPFault Tolerant Systemscs5Electiveyes
UXIaUser Experience and Design of User Interfaces and Services (in English)en5Electiveyes
VIZaVisualization and CAD (in English)en5Electiveyes
VYFComputational Photographycs5Electiveyes
VGEComputational Geometrycs, en5Electiveyes
VNVHigh Performance Computationscs, en5Electiveyes
ZPXProfessional Practice, Abroaden5Electiveyes
ZPOImage Processingcs, en5Electiveyes
All the groups of optional courses
Gr. Number of courses Courses
Hardware and Networks 1 - 9 HSC, PCS, NAV, PPP, PDS
Social Course 1 JA3 winter/summer sem., FCE, AEU winter/summer sem., FIT winter/summer sem., FIK winter/summer sem., HKO winter/summer sem., HVR winter/summer sem., PRM winter/summer sem., RET winter/summer sem.
Modern Artificial Intelligence 1 - 9 AGS, SIN, EVO, SNT
Operating Systems and Security 1 - 9 BIS, KRY, NSB, POS
Data and Signal Processing 1 - 9 ZPJa, KKO, ZRE