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Ph.D.
FEEC, UBMI – Researcher
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2026
KOUBLOVA, V.; MUSILOVÁ, J.; SEDLÁŘ, K.; SPACEK, P.; VIVES, J.; STANKOVA, E.; SEDO, O.; KRALOVA, S.; SEHNAL, L.; SEDLACEK, I.; SVEC, P. Three novel Rothia species associated with Antarctic birds harbour novel biosynthetic gene clusters. FEMS microbiology, ecology, 2026, vol. 102, iss. 7, p. 1-22.
WoS Article
2025
SEDLÁŘ, K.; MUSILOVÁ, J.; HEŘMÁNKOVÁ, K.; VAFEK, Z.; ZIMMER, R.; HELIKAR, T. Predicting Gene Regulatory Networks with Augusta. ENBIK2025 Conference proceedings. 2025. p. 32.ISBN: 978-80-7592-292-2.
Abstract
SEDLÁŘ, K.; BUCHTÍKOVÁ, I.; HEŘMÁNKOVÁ, K.; BEZDÍČEK, M.; UMAIR, M.; KOUŘILOVÁ, X.; ŠABATOVÁ, K.; MUSILOVÁ, J.; ŠLOSÁROVÁ, K.; OBRUČA, S. Genes and Genomes coding PHA synthases. 12th European Symposium on Biopolymers Book of Abstracts. 2025. p. 32.
MUSILOVÁ, J.; VAFEK, Z.; HEŘMÁNKOVÁ, K.; ZIMMER, R.; HELIKAR, T.; SEDLÁŘ, K. FAIRification of Augusta, a Python package for RNA-Seq-Based Inference of Gene Regulatory and Boolean Networks. ENBIK2025 Conference proceedings. 2025. p. 69.ISBN: 978-80-7592-292-2.
2024
KOUŘILOVÁ, X.; BUCHTÍKOVÁ, I.; MUSILOVÁ, J.; SEDLÁŘ, K.; DVOŘÁK, P.; OBRUČA, S. The Promise of Caldimonas thermodepolymerans in Sustainable Production of Polyhydroxyalkanoates. 9th Meeting on Chemistry & Life for Sustainable Future Book of Abstracts. 1. 2024. 1 p.
KOUBLOVÁ, V.; SEDLÁŘ, K.; SEDLÁČEK, I.; MUSILOVÁ, J.; STAŇKOVÁ, E.; KRÁLOVÁ, S.; KOUDELKOVÁ, S.; KRSEK, D.; ŠVEC, P. Corynebacterium mendelii sp. nov., a novel bacterium isolated from Adélie penguin oral cavity. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2024, vol. 74, iss. 1, p. 1-9. ISSN: 1466-5026.
HRABALOVÁ, V.; OPIAL, T.; MUSILOVÁ, J.; SEDLÁŘ, K.; OBRUČA, S. Biotransformation of ferulic acid into vanillyl alcohol and vanillic acid employing thermophilic bacterium Caldimonas thermodepolymerans. ENZYME AND MICROBIAL TECHNOLOGY, 2024, vol. 179, iss. 9, p. 1-6. ISSN: 0141-0229.
MUSILOVÁ, J.; VAFEK, Z.; PUNYIA, B.; ZIMMER, R.; HELIKAR, T.; SEDLÁŘ, K. Augusta: From RNA-Seq to Gene Regulatory Networks and Boolean Models. Computational and Structural Biotechnology Journal, 2024, vol. 23, iss. December 2024, p. 783-790. ISSN: 2001-0370.
HRABALOVÁ, V.; OPIAL, T.; MUSILOVÁ, J.; SEDLÁŘ, K.; POŘÍZKA, J.; DIVIŠ, P.; OBRUČA, S. Conversion of Ferulic Acid by Extremophilic Bacteria. Book of Abstracts. Brno: 2024. 1 p.
2023
ŠVEC, P.; BUSSE, H.; SEDLÁŘ, K.; MUSILOVÁ, J.; KRÁLOVÁ, S.; STAŇKOVÁ, E.; ŠEDO, O.; KRSEK, D.; KOUBLOVÁ, V.; KRIŠTOFOVÁ, L.; SEDLÁČEK, I. Corynebacterium antarcticum sp. nov., Corynebacterium marambiense sp. nov., Corynebacterium meridianum sp. nov., and Corynebacterium pygosceleis sp. nov., isolated from Adelie penguins (Pygoscelis adeliae). SYSTEMATIC AND APPLIED MICROBIOLOGY, 2023, vol. 46, iss. 1, p. 1-14. ISSN: 0723-2020.
ŘEHÁKOVÁ, V.; PERNICOVÁ, I.; KOUŘILOVÁ, X.; SEDLÁČEK, P.; MUSILOVÁ, J.; SEDLÁŘ, K.; KOLLER, M.; KALINA, M.; OBRUČA, S. Biosynthesis of versatile PHA copolymers by thermophilic members of the genus Aneurinibacillus. International Journal of Biological Macromolecules, 2023, vol. 225, iss. 225, p. 1588-1598. ISSN: 0141-8130.
PERNICOVÁ, I.; KOUŘILOVÁ, X.; ŘEHÁKOVÁ, V.; DYAGILEV, D.; MARKOVÁ, L.; SEDLÁŘ, K.; MUSILOVÁ, J.; SEDLÁČEK, P.; OBRUČA, S. Rod Aneurinibacillus – unikátní bakterie mezi termofilními producenty polyhydroxyalkanoátů. Book of abstracts of the 10th International Conference on Chemical Technology. 1. Praha: AMCA, spol. s.r.o., 2023. s. 19.ISBN: 978-80-88214-40-3.
MUSILOVÁ, J.; KOUŘILOVÁ, X.; HEŘMÁNKOVÁ, K.; BEZDÍČEK, M.; IEREMENKO, A.; DVOŘÁK, P.; OBRUČA, S.; SEDLÁŘ, K. Genomic and Phenotypic Comparison of Polyhydroxyalkanoates Producing Strains of genus Caldimonas/Schlegelella. Computational and Structural Biotechnology Journal, 2023, vol. 21, iss. November, p. 5372-5381. ISSN: 2001-0370.
KOUŘILOVÁ, X.; PERNICOVÁ, I.; MUSILOVÁ, J.; SEDLÁŘ, K.; OBRUČA, S. Production of biodegradable polymers by thermophilic bacteria. Czech Chemical Society Symposium Series 2. Czech chemical society symposium series. Praha: Česká společnost chemická, 2023. iss. 2, p. 90.ISSN: 2336-7202.
MUSILOVÁ, J.; VAFEK, Z.; HEŘMÁNKOVÁ, K.; KOUŘILOVÁ, X.; PERNICOVÁ, I.; OBRUČA, S.; PUNYIA, B.; HELIKAR, T.; SEDLÁŘ, K. Introducing Augusta, a Python package for inferring Gene Regulatory and Boolean Networks from RNA-Seq data, and its application to the Caldimonas thermodepolymerans DSM 15344T. 2023.
KOUŘILOVÁ, X.; PERNICOVÁ, I.; MUSILOVÁ, J.; SEDLÁŘ, K.; OBRUČA, S. Využitelnost termofilních bakterií jako producentů biopolymerů. Book of abstracts of the 10th International Conference on Chemical Technology. 1. Praha: AMCA, spol. s.r.o., 2023. s. 20.ISBN: 978-80-88214-40-3.
MUSILOVÁ, J.; KOUŘILOVÁ, X.; HEŘMÁNKOVÁ, K.; BEZDÍČEK, M.; OBRUČA, S.; SEDLÁŘ, K. Comparative genomic analysis of two Schlegelella species brings novel insights into polyhydroxyalkanoates production. 10th International Chemical-Technological Conference (ICCT), Mikulov, Czechia. 2023.
KOUŘILOVÁ, X.; PERNICOVÁ, I.; MUSILOVÁ, J.; SEDLÁŘ, K.; DVOŘÁK, P.; OBRUČA, S. Thermophilic PHA Producer sui generis - Caldimonas thermodepolymerans. European Symposium on Biopolymers. Brno: 2023. 1 p.
NYKRÝNOVÁ, M.; JUREČKOVÁ, K.; MUSILOVÁ, J.; SLANINOVÁ, E.; OBRUČA, S.; HANSLIKOVA, J.; FLEURIOT-BLITMAN, H.; ZINN, M.; SEDLÁŘ, K. Genomic and phenotypic analysis of Rhodospirillum rubrum – wild type and mutant strain. 10th International Chemical-Technological Conference (ICCT), Mikulov, Czechia. 2023.
NYKRÝNOVÁ, M.; JUREČKOVÁ, K.; MUSILOVÁ, J.; SLANINOVÁ, E.; OBRUČA, S.; FLEURIOT-BLITMAN, H.; ZINN, M.; SEDLÁŘ, K. Transcriptome Analysis of Rhodospirillum rubrum - Wild Type and Mutant Strains. 11th European Symposium on Biopolymer (ESBP). 2023.
KOUŘILOVÁ, X.; PERNICOVÁ, I.; MUSILOVÁ, J.; SEDLÁŘ, K.; DVOŘÁK, P.; OBRUČA, S. Caldimonas thermodepolymerans - PHA producer with unique properties. 16th International Congress "Thermophiles-2023. Wales, United Kingdom: Bangor University, 2023. 1 p.
2022
SEDLÁŘ, K.; MUSILOVÁ, J.; KOUŘILOVÁ, X.; BEZDÍČEK, M.; OBRUČA, S. Diversity of Schlegelella thermodepolymerans Revealed with Nanopore Sequencing. In Proceedings of the 9th International Conference on Chemical Technology. Prague: Czech Society of Industrial Chemistry, 2022. p. 373-378. ISBN: 978-80-88307-11-2.
Paper in proceedings (conference paper)
PERNICOVÁ, I.; KOUŘILOVÁ, X.; ŘEHÁKOVÁ, V.; MUSILOVÁ, J.; SEDLÁŘ, K.; OBRUČA, S. “Hot” producers of polyhydroxyalkanoates as the future of the biotechnological industry. 2022. 1 p.
KOUŘILOVÁ, X.; PERNICOVÁ, I.; MUSILOVÁ, J.; VIDLÁKOVÁ, M.; SEDLÁŘ, K.; OBRUČA, S. K udržitelné produkci biopolymerů pomocí termofilních mikroorganismů. 2022. 1 s.
MUSILOVÁ, J.; KOUŘILOVÁ, X.; PERNICOVÁ, I.; BEZDÍČEK, M.; LENGEROVÁ, M.; OBRUČA, S.; SEDLÁŘ, K. Novel thermophilic polyhydroxyalkanoates producing strain Aneurinibacillus thermoaerophilus CCM 8960. Applied microbiology and biotechnology, 2022, vol. 106, iss. 12, p. 1-13. ISSN: 1432-0614.
KOUŘILOVÁ, X.; PERNICOVÁ, I.; MUSILOVÁ, J.; SEDLÁŘ, K.; OBRUČA, S. Some (Bacteria) Like It Hot - Towards Sustianable Produciton of Bioplastics Employing Thermophilic Bacteria. The Biomania Student Scientific Meeting 2022, Book of abstract. 1st. Brno: Masaryk University Press, 2022. p. 123.ISBN: 978-80-280-0040-0.
SEDLÁŘ, K.; MUSILOVÁ, J.; ŠKUTKOVÁ, H.; NYKRÝNOVÁ, M.; JUREČKOVÁ, K.; PERNICOVÁ, I.; SLANINOVÁ, E.; FLEURIOT-BLITMAN, H.; ZINN, M.; OBRUČA, S. Improving structural annotation of Rhodospirillum rubrum DSM 467 with RNA-Seq. 18th International Symposium on Biopolymers (ISBP). 2022.
MUSILOVÁ, J.; KOUŘILOVÁ, X.; BEZDÍČEK, M.; OBRUČA, S.; SEDLÁŘ, K. Comparison of short and long reads in structural and functional annotation of non-model bacteria. 2022. p. 11.
2021
MUSILOVÁ, J.; SEDLÁŘ, K. Tools for Time-Course Simulation in Systems Biology: A Brief Overview. BRIEFINGS IN BIOINFORMATICS, 2021, vol. 22, iss. 5, p. 1-15. ISSN: 1477-4054.
PATÁKOVÁ, P.; BRANSKÁ, B.; VASYLKIVSKA, M.; JUREČKOVÁ, K.; MUSILOVÁ, J.; PROVAZNÍK, I.; SEDLÁŘ, K. Transcriptomic studies of solventogenic clostridia, Clostridium acetobutylicum and Clostridium beijerinckii. BIOTECHNOLOGY ADVANCES, 2021, vol. 58, iss. 1, p. 1-18. ISSN: 1873-1899.
SCHWARZEROVÁ, J.; MUSILOVÁ, J.; JUREČKOVÁ, K.; BRANSKÁ, B.; PROVAZNÍK, I.; PATÁKOVÁ, P.; SEDLÁŘ, K. Operon Structure Inference in Clostridium beijerinckii NRRL B-589 using RNA-Seq. In 8th International Conference on Chemical Technology. 2021. p. 284-289. ISBN: 978-80-88307-08-2.
MUSILOVÁ, J. PATHWAYS IDENTIFICATION IN THE GRAM-POSITIVE BACTERIUM ANEURINIBACILLUS SPECIES H1. In Proceedings II of the 27th Conference STUDENT EEICT 2021 selected papers. 1. Brno: Brno University of Technology, Faculty of Electrical Engineering and Communication, 2021. p. 111-115. ISBN: 978-80-214-5943-4.
MUSILOVÁ, J.; KOUŘILOVÁ, X.; OBRUČA, S.; SEDLÁŘ, K.; LENGEROVÁ, M.; BEZDÍČEK, M. Potential functional capacity of a non-model organism Aneurinibacillus species H1. 2021.
MUSILOVÁ, J.; KOUŘILOVÁ, X.; BEZDÍČEK, M.; LENGEROVÁ, M.; OBRUČA, S.; ŠKUTKOVÁ, H.; SEDLÁŘ, K. First Complete Genome of the Thermophilic Polyhydroxyalkanoates Producing Bacterium Schlegelella thermodepolymerans DSM 15344. Genome Biology and Evolution, 2021, vol. 13, iss. 4, p. 1-13. ISSN: 1759-6653.
KOUŘILOVÁ, X.; PERNICOVÁ, I.; MUSILOVÁ, J.; SEDLÁŘ, K.; OBRUČA, S. Screening cultivation mode and production of the new bacterium Aneurinibacillus thermoaerophilus CCM 8960. The Eurobiotech Journal. Sciendo, 2021. p. 98.
2020
SEDLÁŘ, K.; VASYLKIVSKA, M.; MUSILOVÁ, J.; BRANSKÁ, B.; PROVAZNÍK, I.; PATÁKOVÁ, P. Phenotypic and genomic analysis of isopropanol and 1,3-propanediol producer Clostridium diolis DSM 15410. Genomics, 2020, vol. 113, iss. 1, p. 1109-1119. ISSN: 0888-7543.
KOUŘILOVÁ, X.; PERNICOVÁ, I.; SEDLÁŘ, K.; MUSILOVÁ, J.; SEDLÁČEK, P.; KALINA, M.; KOLLER, M.; OBRUČA, S. Production of polyhydroxyalkanoates (PHA) by a thermophilic strain of Schlegelella thermodepolymerans from xylose rich substrates. BIORESOURCE TECHNOLOGY, 2020, vol. 315, iss. 8, p. 1-7. ISSN: 0960-8524.
MUSILOVÁ, J. HOMOLOGSEARCH: R Package for Identyfying Homologous Sequences between Model and Non-model Organisms. In Proceeding I of the 26th Conference STUDENT EEICT 2020. Brno: Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních technologií, 2020. p. 334-338. ISBN: 978-80-214-5867-3.
KOUŘILOVÁ, X.; MUSILOVÁ, J.; SEDLÁŘ, K.; BEDNÁROVÁ, K.; PERNICOVÁ, I.; OBRUČA, S. Thermophilic Bacterium Schlegelella thermodepolymerans DSM 15344 as a Producer of Polyhydroxyalkanoates. Studentská odborná konference CHEMIE JE ŽIVOT 2020. Brno: Vysoké učení technické v Brně, Fakulta chemická, 2020. p. 90.ISBN: 978-80-214-5920-0.
2019
MUSILOVÁ, J.; JUREČKOVÁ, K.; KOLEK, J.; PROVAZNÍK, I.; PATÁKOVÁ, P.; SEDLÁŘ, K. Signaling Pathway for Butanol Production in Clostridium beijerinckii NRRL B-598. In Proceedings of the 7th International Conference on Chemical Technology. Czech Society of Industrial Chemistry, 2019. p. 46-52. ISBN: 978-80-88307-00-6.
PATÁKOVÁ, P.; VASYLKIVSKA, M.; JUREČKOVÁ, K.; MUSILOVÁ, J.; KOLEK, J.; BRANSKÁ, B.; SEDLÁŘ, K. Stress response to butyric acid and butanol formation in Clostridium beijerinckii at transcriptional level. 14th International Symposium on the Genetics of Industrial Microorganisms - Abstracts. 2019. p. 209.
MUSILOVÁ, J. Signaling Pathway for Butanol Production in Clostridium beijerinckii NRRL B-598. In Proceedings of the 25th Conference STUDENT EEICT 2019. Brno: Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních technologií, 2019. p. 187-190. ISBN: 978-80-214-5735-5.
2018
MUSILOVÁ, J.; KOŠČOVÁ, P. Network Analysis of Proteins Associated with Schizophrenia. In Proceedings of the 24rd Conference STUDENT EEICT 2018. Brno: 2018. s. 273-275. ISBN: 978-80-214-5614-3.
2017
MUSILOVÁ, J.; KOŠČOVÁ, P. Interakce léčiv užívaných při léčbě schizofrenie. In Proceedings of the 23rd Conference STUDENT EEICT 2017. Brno: 2017. s. 18-20. ISBN: 978-80-214-5496-5.
MUSILOVÁ, J.; VAFEK, Z.; ZIMMER, R.; HELIKAR, T.; SEDLÁŘ, K. Augusta: A FAIRified Python package for RNA-Seq-Based Inference of Gene Regulatory and Boolean Networks.
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