Branch Details
Bioinformatics and Biocomputing
Original title in Czech: Bioinformatika a biocomputingFITAbbreviation: MBIAcad. year: 2018/2019
Programme: Information Technology
Length of Study: 2 years
Accredited from: 1.1.2005Accredited until: 31.12.2024
Profile
Students will get acquainted with the advanced algorithms for processing, analysis and presentation of biological data, in particular genomic and proteomic data. In addition to the use of the standard algorithms, students will be able to develop new algorithms in this area. Students will become familiar with the concepts of molecular genetics and with standard biological databases. Students will be able to communicate with biologists and work in multidisciplinary teams. The knowledge acquired by studying the biological systems will be used for understanding bio-inspired computing systems. Students will get acquainted with the principles of natural computing, in particular, with evolutionary design, evolvable systems, DNA computing, fuzzy computing, neural computing and unconventional computing. Students will be able to integrate the bio-inspired principles into existing systems in order to improve their efficiency.
Key learning outcomes
Student of the branch acquire deeper knowledge in the bioinformatics and natural computing. This give him knowledge and skills base to analyse, design and verification of problems of biological databases as well as use, design, implement and accelerate algorithms for analysis of the biological data. He/she is able to apply natural computing algorithms (evolutionary algorithms, artificial neural networks, fuzzy systems etc.) in the complex design and optimization problems.
Occupational profiles of graduates with examples
- A graduate has good insight into bioinformatics and natural computing; he/she is familiar with concepts of molecular genetics. A graduate can utilized biological databases as well as use, design, implement and accelerate algorithms for analysis of the biological data. He/she is able to apply natural computing algorithms (evolutionary algorithms, artificial neural networks, fuzzy systems etc.) in the complex design and optimization problems.
- A graduate has good insight into information technology, particularly into advanced database systems, theoretical computer science, hardware/software codesign and parallel and distributed algorithms.
- A graduate is ready for development, operation and management of bioinformatic computer systems, further for the research and development work in the area of methods, tools and technologies for bio-inspired computing systems. He/she is able to perform an experimental work, analyze and interpret data. He/she is able to work individually or in a team, present the results in written or oral form and further educate him/her-self.
- A carrier is possible in professions such as bioinformatic system developer, system integrator, programmer, and database/information system administrator in biotechnological companies, health service or police. Graduates in this specialization can use their education in development and research divisions of the companies dealing with methods, tools and technologies for bioinformatic system development and further in companies which utilize artificial intelligence principles in their products.
Guarantor
Course structure diagram with ECTS credits
Abbreviation | Title | L. | Cr. | Com. | Compl. | Hr. range | Gr. | Op. |
---|---|---|---|---|---|---|---|---|
BIO | Biometric Systems | cs, en | 5 | Compulsory | Cr,Ex | P - 39 / L - 6 / PR - 7 | yes | |
MAT | Mathematical Structures in Computer Science | cs, en | 5 | Compulsory | Ex | P - 39 / COZ - 13 | yes | |
BCO_MOG1 | Molecular Genetics I | cs | 3 | Compulsory | Ex | P - 26 | yes | |
PDB | Advanced Database Systems | cs, en | 5 | Compulsory | Cr,Ex | P - 26 / COZ - 6 / Cp - 6 / PR - 14 | yes | |
TIN | Theoretical Computer Science | cs | 5 | Compulsory | Cr,Ex | P - 39 / PR - 13 | yes | |
STI | Theoretical Computer Science Seminar | cs | 2 | Elective | Cr | S - 26 | yes |
Abbreviation | Title | L. | Cr. | Com. | Compl. | Hr. range | Gr. | Op. |
---|---|---|---|---|---|---|---|---|
BIF | Bioinformatics | cs | 5 | Compulsory | Ex | P - 26 / Cp - 12 / PR - 14 | yes | |
BIN | Bio-Inspired Computers | cs | 5 | Compulsory | Ex | P - 26 / Cp - 8 / PR - 18 | yes | |
PRL | Parallel and Distributed Algorithms | cs | 5 | Compulsory | Cr,Ex | P - 39 / PR - 13 | yes | |
PP1 | Project Practice 1 | cs, en | 5 | Elective | Cr | PR - 52 | yes |
Abbreviation | Title | L. | Cr. | Com. | Compl. | Hr. range | Gr. | Op. |
---|---|---|---|---|---|---|---|---|
PBI | Advanced Bioinformatics | cs | 4 | Compulsory | Ex | P - 20 / Cp - 13 / PR - 6 | yes | |
SEP | Semester Project | cs, en | 5 | Compulsory | GCr | PR - 65 | yes | |
SFC | Soft Computing | cs | 5 | Compulsory | Cr,Ex | P - 26 / PR - 26 | yes | |
THE | Game Theory | cs | 4 | Compulsory | Cr,Ex | P - 26 / PR - 13 | yes | |
ZZN | Knowledge Discovery in Databases | cs | 5 | Compulsory | Cr,Ex | P - 39 / PR - 13 | yes | |
PP2 | Project Practice 2 | cs | 5 | Elective | GCr | PR - 52 | yes |
Abbreviation | Title | L. | Cr. | Com. | Compl. | Hr. range | Gr. | Op. |
---|---|---|---|---|---|---|---|---|
DIP | Master's Thesis | cs, en | 13 | Compulsory | Cr | PR - 169 | yes |
Abbreviation | Title | L. | Cr. | Com. | Compl. | Hr. range | Gr. | Op. |
---|---|---|---|---|---|---|---|---|
HSC | Hardware/Software Codesign | cs, en | 5 | Compulsory-optional | Cr,Ex | P - 39 / PR - 13 | Hardware and Networks | yes |
PCS | Advanced Digital Systems | cs | 5 | Compulsory-optional | Ex | P - 26 / Cp - 10 / PR - 16 | Hardware and Networks | yes |
JA3 | Conversation through Hot Current Issues | cs, en | 3 | Compulsory-optional | Cr,Ex | COZ - 26 | Social Course | yes |
AEU | English for Europe | cs, en | 3 | Compulsory-optional | Cr,Ex | COZ - 26 | Social Course | yes |
FCE | English: Preparatory Course for FCE Exam | cs, en | 3 | Compulsory-optional | Cr | COZ - 26 | Social Course | yes |
FIT | History and Philosophy of Technology | cs, en | 3 | Compulsory-optional | Cr | P - 26 | Social Course | yes |
HKO | Communication Skills | cs, en | 3 | Compulsory-optional | Cr | COZ - 26 | Social Course | yes |
HKA | Assertiveness and Conflicts | cs | 3 | Compulsory-optional | Cr | COZ - 26 | Social Course | yes |
PRM | Fundamentals of Law | cs, en | 3 | Compulsory-optional | Cr | P - 26 | Social Course | yes |
HPR | Presentation Skills | cs | 3 | Compulsory-optional | Cr | COZ - 26 | Social Course | yes |
RET | Rhetoric | cs, en | 3 | Compulsory-optional | Cr | P - 26 | Social Course | yes |
HVR | Leadership and People Management | cs, en | 3 | Compulsory-optional | Cr | COZ - 26 | Social Course | yes |
SIN | Intelligent Systems | cs | 5 | Compulsory-optional | Ex | P - 26 / COZ - 6 / PR - 20 | Modern Artificial Intelligence | yes |
BIS | Information System Security | cs | 5 | Compulsory-optional | Cr,Ex | P - 39 / PR - 13 | Operating Systems and Security | yes |
ZPJa | Natural Language Processing (in English) | en | 5 | Compulsory-optional | Ex | P - 26 / PR - 26 | Data and Signal Processing | no |
AIS | Information Systems Analysis and Design | cs | 5 | Elective | Cr,Ex | P - 39 / PR - 13 | yes | |
ACH | Processor Architecture | cs | 5 | Elective | Cr,Ex | P - 26 / Cp - 10 / PR - 16 | yes | |
BMS | Wireless and Mobile Networks | cs | 5 | Elective | Cr,Ex | P - 39 / PR - 13 | yes | |
C3P | Troubleshooting and Maintaining Cisco IP Networks (TSHOOT) | cs | 5 | Elective | GCr | L - 52 | yes | |
EIP | Economics of Information Products | cs | 5 | Elective | Ex | P - 26 / COZ - 6 / Cp - 12 / PR - 8 | yes | |
FAV | Formal Analysis and Verification | cs | 5 | Elective | Cr,Ex | P - 39 / PR - 13 | yes | |
GZN | Graphical and Sound Interfaces and Standards | cs | 5 | Elective | Ex | P - 26 / Cp - 12 / PR - 14 | yes | |
GJA | Graphical User Interfaces in Java | cs, en | 5 | Elective | Cr,Ex | P - 26 / PR - 26 | yes | |
GUX | Graphical User Interfaces in X Window System | cs | 5 | Elective | Ex | P - 26 / PR - 26 | yes | |
GMU | Graphic and Multimedia Processors | cs | 5 | Elective | Cr,Ex | P - 26 / Cp - 8 / PR - 18 | yes | |
GAL | Graph Algorithms | cs, en | 5 | Elective | Ex | P - 39 / PR - 13 | yes | |
SEN | Intelligent Sensors | cs | 5 | Elective | Cr,Ex | P - 26 / COZ - 4 / L - 4 / PR - 18 | yes | |
MMOB | Biological System Modelling | cs | 4 | Elective | Cr,Ex | P - 26 / Cp - 13 | no | |
PGR | Computer Graphics | cs, en | 5 | Elective | Ex | P - 39 / Cp - 6 / PR - 7 | yes | |
POVa | Computer Vision (in English) | en | 5 | Elective | Ex | P - 26 / PR - 26 | yes | |
PGPa | Advanced Computer Graphics (in English) | en | 5 | Elective | Ex | P - 26 / PR - 26 | yes | |
PKS | Advanced Communication Systems | cs | 5 | Elective | Cr,Ex | P - 39 / L - 6 / PR - 7 | yes | |
PDI | Distributed Application Environment | cs, en | 5 | Elective | Ex | P - 26 / Cp - 6 / PR - 20 | yes | |
ROSa | Real-Time Operating Systems (in English) | en | 5 | Elective | Ex | P - 26 / Cp - 10 / PR - 16 | yes | |
ROBa | Robotics (in English) | en | 5 | Elective | Ex | P - 26 / L - 6 / PR - 20 | yes | |
SMT | Seminar of Mathematical Structures | cs | 2 | Elective | Cr | S - 26 | yes | |
SRI | Strategic Management of Information Systems | cs | 5 | Elective | Ex | P - 26 / COZ - 2 / Cp - 4 / PR - 20 | yes | |
TAMa | Application Development for Mobile Devices (in English) | en | 5 | Elective | GCr | P - 26 / PR - 26 | yes | |
VYPa | Compiler Construction (in English) | en | 5 | Elective | Ex | P - 39 / PR - 13 | yes | |
VIN | Computer Art | cs | 5 | Elective | GCr | P - 26 / PR - 26 | yes | |
ZPX | Professional Practice, Abroad | en | 5 | Elective | Cr | PR - 52 | yes |
Abbreviation | Title | L. | Cr. | Com. | Compl. | Hr. range | Gr. | Op. |
---|---|---|---|---|---|---|---|---|
ARC | Parallel System Architecture and Programming | cs | 5 | Compulsory-optional | Cr,Ex | P - 26 / Cp - 12 / PR - 14 | Hardware and Networks | yes |
NAV | Design of External Adapters and Embedded Systems | cs | 5 | Compulsory-optional | Ex | P - 26 / L - 16 / PR - 10 | Hardware and Networks | yes |
PDS | Data Communications, Computer Networks and Protocols | cs, en | 5 | Compulsory-optional | Ex | P - 39 / COZ - 4 / L - 2 / PR - 7 | Hardware and Networks | yes |
JA3 | Conversation through Hot Current Issues | cs, en | 3 | Compulsory-optional | Cr,Ex | COZ - 26 | Social Course | yes |
AEU | English for Europe | cs, en | 3 | Compulsory-optional | Cr,Ex | COZ - 26 | Social Course | yes |
FIT | History and Philosophy of Technology | cs, en | 3 | Compulsory-optional | Cr | P - 26 | Social Course | no |
FIK | Philosophy and the Culture | cs, en | 3 | Compulsory-optional | Cr | P - 26 | Social Course | yes |
HKO | Communication Skills | cs, en | 3 | Compulsory-optional | Cr | COZ - 26 | Social Course | yes |
HKA | Assertiveness and Conflicts | cs | 3 | Compulsory-optional | Cr | COZ - 26 | Social Course | yes |
PRM | Fundamentals of Law | cs, en | 3 | Compulsory-optional | Cr | P - 26 | Social Course | yes |
HPR | Presentation Skills | cs | 3 | Compulsory-optional | Cr | COZ - 26 | Social Course | yes |
RET | Rhetoric | cs, en | 3 | Compulsory-optional | Cr | P - 26 | Social Course | yes |
HVR | Leadership and People Management | cs, en | 3 | Compulsory-optional | Cr | COZ - 26 | Social Course | yes |
AGS | Agents and Multiagent Systems | cs | 5 | Compulsory-optional | Ex | P - 26 / Cp - 13 / PR - 13 | Modern Artificial Intelligence | yes |
EVO | Applied Evolutionary Algorithms | cs | 5 | Compulsory-optional | Ex | P - 26 / Cp - 12 / PR - 14 | Modern Artificial Intelligence | yes |
SNT | Simulation Tools and Techniques | cs | 5 | Compulsory-optional | Cr,Ex | P - 39 / PR - 13 | Modern Artificial Intelligence | yes |
KRY | Cryptography | cs | 5 | Compulsory-optional | Cr,Ex | P - 39 / PR - 13 | Operating Systems and Security | yes |
NSB | Projecting, Administration and Security | cs | 5 | Compulsory-optional | Cr,Ex | P - 26 / L - 12 / PR - 6 | Operating Systems and Security | yes |
POS | Advanced Operating Systems | cs | 5 | Compulsory-optional | Ex | P - 39 / PR - 13 | Operating Systems and Security | yes |
KKO | Data Coding and Compression | cs | 5 | Compulsory-optional | Cr,Ex | P - 26 / PR - 26 | Data and Signal Processing | yes |
ZRE | Speech Signal Processing | cs, en | 5 | Compulsory-optional | Ex | P - 26 / COZ - 2 / Cp - 12 / PR - 12 | Data and Signal Processing | yes |
BZA | Secure Hardware Devices | cs | 5 | Elective | Ex | P - 39 / PR - 13 | yes | |
DFAa | Digital Forensics (in English) | en | 5 | Elective | Ex | P - 26 / L - 12 / PR - 14 | yes | |
DJA | Dynamic Languages | cs | 5 | Elective | Ex | P - 26 / PR - 26 | yes | |
FLP | Functional and Logic Programming | cs | 5 | Elective | Cr,Ex | P - 26 / Cp - 12 / PR - 14 | yes | |
FVS | Functional Verification of Digital Systems | cs | 5 | Elective | Ex | P - 26 / L - 8 / PR - 18 | no | |
FYO | Physical Optics | cs, en | 5 | Elective | Ex | P - 26 / COZ - 13 / PR - 13 | yes | |
GIS | Geographical Information Systems | cs | 5 | Elective | Cr,Ex | P - 26 / Cp - 10 / PR - 16 | yes | |
WAP | Internet Applications | cs | 5 | Elective | Cr,Ex | P - 39 / PR - 13 | yes | |
LOG | Logic | cs | 5 | Elective | Cr,Ex | P - 26 / COZ - 26 | yes | |
MPR | Project Management | cs | 5 | Elective | Cr,Ex | P - 26 / COZ - 4 / Cp - 2 / PR - 20 | yes | |
MEK | Economics for Managers | cs | 5 | Elective | Cr,Ex | P - 26 / COZ - 26 | yes | |
HMR | Marketing | cs | 5 | Elective | Cr,Ex | P - 26 / C1 - 26 | yes | |
MMAT | Matrices and Tensors Calculus | cs | 5 | Elective | Cr,Ex | P - 26 / CPP - 18 / O - 8 | yes | |
MUL | Multimedia | cs, en | 5 | Elective | Ex | P - 26 / Cp - 13 / PR - 13 | yes | |
OPM | Optimization | cs | 4 | Elective | Cr,Ex | P - 26 / Cp - 13 | yes | |
PES | Petri Nets | cs | 5 | Elective | Ex | P - 39 / Cp - 6 / PR - 7 | yes | |
PIS | Advanced Information Systems | cs | 5 | Elective | Cr,Ex | P - 39 / PR - 13 | yes | |
PMA | Project Manager | cs | 5 | Elective | GCr | P - 26 / COZ - 26 | yes | |
C2P | Implementing Cisco IP Switched Networks (SWITCH) | cs | 5 | Elective | GCr | L - 52 | no | |
SLOa | Complexity (in English) | en | 5 | Elective | Ex | P - 26 / PR - 26 | yes | |
C1P | Implementing Cisco IP Routing (ROUTE) | cs | 5 | Elective | GCr | L - 52 | yes | |
SSP | Stochastic Processes | cs | 4 | Elective | Cr,Ex | P - 26 / CPP - 13 | yes | |
FSYS | System Biology | cs | 5 | Elective | Cr,Ex | P - 26 / Cp - 26 | yes | |
SPP | Fault Tolerant Systems | cs | 5 | Elective | Cr,Ex | P - 26 / PR - 26 | yes | |
UXIa | User Experience and Design of User Interfaces and Services (in English) | en | 5 | Elective | GCr | P - 16 / COZ - 10 / PR - 26 | yes | |
VIZa | Visualization and CAD (in English) | en | 5 | Elective | GCr | P - 26 / Cp - 12 / PR - 14 | yes | |
VYF | Computational Photography | cs | 5 | Elective | GCr | P - 26 / PR - 26 | yes | |
VGE | Computational Geometry | cs, en | 5 | Elective | Ex | P - 26 / PR - 26 | yes | |
VNV | High Performance Computations | cs, en | 5 | Elective | Ex | P - 26 / Cp - 26 | yes | |
MMZS | Advanced Methods of Signal Processing | cs | 6 | Elective | Cr,Ex | P - 39 / Cp - 26 | yes | |
ZPX | Professional Practice, Abroad | en | 5 | Elective | Cr | PR - 52 | yes | |
ZPO | Image Processing | cs, en | 5 | Elective | Ex | P - 26 / PR - 26 | yes |
All the groups of optional courses | ||
---|---|---|
Gr. | Number of courses | Courses |
Hardware and Networks | 1 - 9 | HSC, PCS, ARC, NAV, PDS |
Social Course | 1 | JA3 winter/summer sem., AEU winter/summer sem., FCE, FIT winter/summer sem., HKO winter/summer sem., HKA winter/summer sem., PRM winter/summer sem., HPR winter/summer sem., RET winter/summer sem., HVR winter/summer sem., FIK |
Modern Artificial Intelligence | 1 - 9 | SIN, AGS, EVO, SNT |
Operating Systems and Security | 1 - 9 | BIS, KRY, NSB, POS |
Data and Signal Processing | 1 - 9 | ZPJa, KKO, ZRE |