Publication results

• 2025

  VAIBAROVA, V.; KRÁLOVÁ, S.; PALÍKOVÁ, M.; SCHWARZEROVÁ, J.; ČEJKOVÁ, D.; ČÍŽEK, A. Antibiotická rezistence a struktura populace Flavobacterium psychrophilum v chovech lososovitých ryb v České republice. Veterinářství. Profi Press, s.r.o. GJ, 2025, roč. 75, č. 1, s. 36-41. ISSN: 0506-8231.
  Detail

  RYŠAVÁ, M.; PALKOVIČOVÁ, J.; ČEJKOVÁ, D.; SCHWARZEROVÁ, J.; JAKUBÍČKOVÁ, M.; STREĎANSKÁ, K.; AYTAN-AKTUG, D.; OTANI, S.; DOLEJSKÁ, M. Dynamic changes in the plasmidome and resistome in the gastrointestinal tract of chickens. 10th Symposium on Antimicrobial Resistance in Animals and the Environment, ARAE, Berlin, Germany. 2025.
  Detail

  RYŠAVÁ, M.; PALKOVIČOVÁ, J.; SCHWARZEROVÁ, J.; ČEJKOVÁ, D.; JAKUBÍČKOVÁ, M.; DOLEJSKÁ, M. Plasmid-Mediated Antibiotic Resistance Dynamics in Broiler Chickens Revealed by Long-Read Sequencing. ENBIK 2025, Karlov pod Pradědem. 2025.
  Detail

  MASAŘÍKOVÁ, M.; PAPOUŠKOVÁ, A.; SUKKAR, I.; LAUŠOVÁ, J.; ČEJKOVÁ, D.; ČÍŽEK, A. Genomic analysis of extended-spectrum beta-lactamase-producing E. coli from Czech diary calves and their caretakers. Frontiers in Veterinary Science, 2025, vol. 12, no. 1552297, 9 p. ISSN: 2297-1769.
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• 2024

  VARGA, M.; JOLLEY, K.; SCHWARZEROVÁ, J.; ČEJKOVÁ, D.; MAIDEN, M. Using visual analytics to make sense of genomics data. Oxford UK: Oxford hub, 2024. 1 p.
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  POSPÍŠILOVÁ, P.; ČEJKOVÁ, D.; BURŠÍKOVÁ, P.; FEDROVÁ, P.; MIKALOVA, L.; NAJT, D.; TOM, N.; HISGEN, L.; LUEERT, S.; LUMEIJ, J.; AGREN, E.; KNAUF, S.; ŠMAJS, D. The hare syphilis agent is related to, but distinct from, the treponeme causing rabbit syphilis. PLoS One, 2024, vol. 19, no. 8, p. 1-15. ISSN: 1932-6203.
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  Rajasekaran, L; Pankaj, V; Bhogal, I; Cejkova, D. In silico analysis of rutin from ruta chalepensis.L for NF-X1 inhibition in cervical cancer: Insights from HPTLC studies. Proceedings I of the 30th STUDENT EEICT 2024. Brno, Czech Republic: Brno University of Technology, 2024. p. 1-5.
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  SCHWARZEROVÁ, J.; RAJASEKARAN, L.; JUREČKOVÁ, K.; NEJEZCHLEBOVÁ, J.; VARGA, M.; PROVAZNÍK, V.; WECKWERTH, W.; ČEJKOVÁ, D. Visualizing Horizontal Gene Transfer Detection in Phylogenetically Divergent Bacteria. In Lecture Notes in Bioinformatics. Lecture Notes in Computer Science. 14849. Springer Nature, 2024. no. II., p. 267-277. ISBN: 978-3-031-64636-2. ISSN: 1611-3349.
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  PARTOVI NASR, M.; SCHWARZEROVÁ, J.; ČEJKOVÁ, D.; ŠABATOVÁ, K.; JAKUBÍČKOVÁ, M. Detection of antimicrobial resistance genes in chicken feces from metagenomic samples: a comparative study on bioinformatics tools. 2024. 1 p.
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  VAIBAROVA, V.; KRÁLOVÁ, S.; PALÍKOVÁ, M.; SCHWARZEROVÁ, J.; NEJEZCHLEBOVÁ, J.; ČEJKOVÁ, D.; ČÍŽEK, A. Genetic and phenotypic diversity of Flavobacterium psychrophilum isolates from Czech salmonid fish farms. BMC MICROBIOLOGY, 2024, vol. 24, no. 1, p. 1-15. ISSN: 1471-2180.
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  SCHWARZEROVÁ, J.; VARGA, M.; NEJEZCHLEBOVÁ, J.; WECKWERTH, W.; RYCHLÍK, I.; ČEJKOVÁ, D. Exploring Mobile Genetic Elements: A Novel In-Silico Approach to Analyzing the Microbiome. Germany: 2024. 1 p.
  Detail

• 2023

  KNAUF, S.; HISGEN, L.; AGREN, E.; BARLOW, A.; FAEHNDRICH, M.; VOIGT, U.; FISCHER, L.; GRILLOVÁ, L.; HALLMAIER-WACKER, L.; KIK, M.; KLINK, J.; KŘENOVÁ, J.; LAVAZZA, A.; LUEERT, S.; NOVÁKOVÁ, M.; ČEJKOVÁ, D.; PACIONI, C.; TROGU, T.; ŠMAJS, D.; ROOS, C. High prevalence and genetic diversity of Treponema paraluisleporidarum isolates in European lagomorphs. Microbiology Spectrum, 2023, vol. 12, no. 1, 15 p. ISSN: 2165-0497.
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  NEJEZCHLEBOVÁ, J.; SCHWARZEROVÁ, J.; ČEJKOVÁ, D. An insight into horizontal gene transfer in Bacteroidetes spp. using in-silico analysisof operon structures. Proceedings I of the 29th Conference STUDENT EEICT 2023 General papers. 1. Brno: Brno University of Technology, Faculty of Electrical Engineering and Communication, 2023. p. 210-213. ISBN: 978-80-214-6153-6.
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  JANEČKOVÁ, K.; ROOS, C.; FEDROVÁ, P.; TOM, N.; ČEJKOVÁ, D.; LUEERT, S.; KEYYU, J.; CHUMA, I.; KNAUF, S.; ŠMAJS, D. The genomes of the yaws bacterium, Treponema pallidum subsp. pertenue, of nonhuman primate and human origin are not genomically distinct. PLoS Neglected Tropical Diseases, 2023, vol. 17, no. 9, 21 p. ISSN: 1935-2735.
  Detail

  SCHWARZEROVÁ, J.; LABANAVA, A.; RYCHLÍK, I.; VARGA, M.; ČEJKOVÁ, D. A minireview on the bioinformatics analysis of mobile gene elements in microbiome research. Frontiers in Bacteriology, 2023, vol. 2, no. 1, 8 p. ISSN: 2813-6144.
  Detail

  SCHWARZEROVÁ, J.; ZEMAN, M.; BABÁK, V.; JUREČKOVÁ, K.; NYKRÝNOVÁ, M.; VARGA, M.; WECKWERTH, W.; DOLEJSKÁ, M.; PROVAZNÍK, V.; RYCHLÍK, I.; ČEJKOVÁ, D. Detecting horizontal gene transfer among microbiota: an innovative pipeline for identifying co-shared genes within the mobilome through advanced comparative analysis. Microbiology Spectrum, 2023, vol. 12, no. 1, 23 p. ISSN: 2165-0497.
  Detail

  MATIAŠOVIC, J.; BZDIL, J.; PAPEŽÍKOVÁ, I.; ČEJKOVÁ, D.; VASINA, E.; BIZOS, J.; NAVRÁTIL, S.; ŠEDIVÁ, M.; KLAUDINY, J.; PIKULA, J. Genomic analysis of Paenibacillus larvae isolates from the Czech Republic and the neighbouring regions of Slovakia. RESEARCH IN VETERINARY SCIENCE, 2023, vol. 158, no. 3, p. 34-40. ISSN: 1532-2661.
  Detail

• 2022

  SCHWARZEROVÁ, J.; ČEJKOVÁ, D. Identification of horizontal genes transfer elements across strains inhabiting the same niche using pan-genome analysis. In Proceedings I of the 28th Conference STUDENT EEICT 2022 General Papers. Brno: Brno University of Technology, Faculty of Electrical Engineering and Communication, 2022. p. 416-420. ISBN: 978-80-214-6029-4.
  Detail

  SCHWARZEROVÁ, J.; ZEMAN, M.; RYCHLÍK, I.; WECKWERTH, W.; PROVAZNÍK, I.; DOLEJSKÁ, M.; ČEJKOVÁ, D. Systems biology approach for analysis of mobile genetic elements in chicken gut microbiome. In 2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE Computer Society, 2022. p. 2865-2870. ISBN: 978-1-4577-1799-4.
  Detail

  ČEJKOVÁ, D.; STREĎANSKÁ, K.; JUREČKOVÁ, K.; NYKRÝNOVÁ, M.; SCHWARZEROVÁ, J.; DOLEJSKÁ, M. Horizontal gene transfer network in chicken gut microbiome. 14th Host Pathogen Interaction Forum 2022. Hradec Kralove: 2022. 1 p. ISBN: 978-80-906723-2-1.
  Detail

  SCHWARZEROVÁ, J.; ZEMAN, M.; WECKWERTH, W.; PROVAZNÍK, I.; RYCHLÍK, I.; ČEJKOVÁ, D. Comprehensive analysis of mobile genetic elements in chicken gut microbiome using a novel in-silico approach. 14th Host Pathogen Interaction Forum 2022. Hradec Kralove: 2022. 1 p. ISBN: 978-80-906723-2-1.
  Detail

• 2021

  JUŘICOVÁ, H.; MATIAŠOVICOVÁ, J.; KUBASOVÁ, T.; ČEJKOVÁ, D.; RYCHLÍK, I. The distribution of antibiotic resistance genes in chicken gut microbiota commensals. Scientific Reports, 2021, vol. 11, no. 1, p. 1-10. ISSN: 2045-2322.
  Detail

  JUŘICOVÁ, H.; MATIAŠOVICOVÁ, J.; KUBASOVÁ, T.; ČEJKOVÁ, D.; RYCHLÍK, I. Distribuce genů rezistence k antibiotikům u komenzálních bakterií slepého střeva kura domácího. Veterinářství. Profi Press, s.r.o. GJ, 2021, roč. 71, č. 7, s. 411-414. ISSN: 0506-8231.
  Detail

• 2015

  GERŽOVÁ, L.; BABÁK, V.; SEDLÁŘ, K.; FALDYNOVÁ, M.; VÍDEŇSKÁ, P.; ČEJKOVÁ, D.; NYGAARD JENSEN, A.; DENIS, M.; KEROUANTON, A.; RICCI, A.; CIBIN, V.; ÖSTERBERG, J.; RYCHLÍK, I. Characterization of antibiotic resistance gene abundance and microbiota composition in feces of organic and conventional pigs from four EU countries. PLoS One, 2015, vol. 10, no. 7, p. 1-10. ISSN: 1932-6203.
  Detail

• 2014

  VÍDEŇSKÁ, P.; RAHMAN, M.; FALDYNOVÁ, M.; BABÁK, V.; MATULOVÁ, M.; PRUKNER-RADOVCIC, E.; KŘÍŽEK, I.; SMOLE-MOZINA, S.; KOVAC, J.; SZMOLKA, A.; NAGY, B.; SEDLÁŘ, K.; ČEJKOVÁ, D.; RYCHLÍK, I. Characterization of Egg Laying Hen and Broiler Fecal Microbiota in Poultry Farms in Croatia, Czech Republic, Hungary and Slovenia. PLoS One, 2014, vol. 9, no. 10, p. e110076 (e110076 p.)ISSN: 1932-6203.
  Detail

  VÍDEŇSKÁ, P.; SEDLÁŘ, K.; LUKAC, M.; FALDYNOVÁ, M.; GERŽOVÁ, L.; ČEJKOVÁ, D.; ŠIŠÁK, F.; RYCHLÍK, I. Succession and Replacement of Bacterial Populations in the Caecum of Egg Laying Hens over Their Whole Life. PLoS One, 2014, vol. 9, no. 12, p. 1-14. ISSN: 1932-6203.
  Detail

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