Publications

• 2024

  XIE, M.; KAISER, M.; GERSHTEIN, Y.; SCHNYDER, D.; DEVIATIIAROV, R.; GAZIZOVA, G.; SHAGIMARDANOVA, E.; ZIKMUND, T.; KERCKHOFS, G.; IVASHKIN, E.; BATKOVSKYTE, D.; NEWTON, P.; ANDERSSON, O.; FRIED, K.; GUSEV, O.; ZEBERG, H.; KAISER, J.; ADAMEYKO, I.; CHAGIN, A. The level of protein in the maternal murine diet modulates the facial appearance of the offspring via mTORC1 signaling. NATURE COMMUNICATIONS, 2024, vol. 15, no. March, p. 1-15. ISSN: 2041-1723.
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  KAISER, M.; ZIKMUND, T.; SIDDHARTH, V.; METSCHER, B.; ADAMEYKO, I.; RICHMAN, J.; KAISER, J. 3D atlas of the human fetal chondrocranium in the middle trimester. Scientific data, 2024, vol. 11, no. 1, p. 1-6. ISSN: 2052-4463.
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• 2023

  Sunadome, K.; Erickson, A.G.; Kah, D.; Fabry, B.; Adori, C.; Kameneva, P.; Faure, L.; Kanatani, S.; Kaucka, M.; Ellström, I.D.; Tesarova, M.; Zikmund, T.; Kaiser, J.; Edwards, S.; Maki, K.; Adachi, T.; Yamamoto, T.; Fried K.; Adameyko, I. Directionality of developing skeletal muscles is set by mechanical forces. NATURE COMMUNICATIONS, 2023, vol. 14, no. 3060, p. 1-24. ISSN: 2041-1723.
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  Petersen, J.; Englmaier, L.; Artemov, A.V.; Poverennaya, I; Mahmoud, R.; Bouderlique, T.; Tesarova, M.; Deviatiiarov, R.; Szilvásy-Szabó, A.; Akkuratov, E.E.; Reguera, D.P.; Zeberg, H.; Kaucka, M.; Kastriti, M.E.; Krivanek, J.; Radaszkiewicz, T.; Gömöryová, K.; Knauth, S.; Potesil, D.; Zdrahal, Z.; Sri Ganji, R.; Grabowski, A.; Buhl, M.E.; Zikmund, T.; Kavkova, M.; Axelson, H.; Lindgren, D.; Kramann, D.; Kuppe, C.; Erdélyi, F.; Máté, Z.; Szabó, G.; Koehne, T.; Harkany, T.; Fried, K. et al. A previously uncharacterized Factor Associated with Metabolism and Energy (FAME/C14orf105/CCDC198/1700011H14Rik) is related to evolutionary adaptation, energy balance, and kidney physiology. NATURE COMMUNICATIONS, 2023, vol. 14, no. 3092, p. 1-22. ISSN: 2041-1723.
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  KAISER, M.; ZIKMUND, T.; KAVKOVÁ, M.; KAISER, J. a kol. Author Correction: A previously uncharacterized Factor Associated with Metabolism and Energy (FAME/C14orf105/CCDC198/1700011H14Rik) is related to evolutionary adaptation, energy balance, and kidney physiology (vol 14, 3092, 2023). NATURE COMMUNICATIONS. BERLIN: NATURE PORTFOLIO, 2023. ISSN: 2041-1723.
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• 2022

  KAUCKA, M.; JOVEN ARAUS, A.; TESAŘOVÁ, M.; CURRIE, J. D.; BOSTROM, J.; KAVKOVÁ, M.; PETERSEN, J.; YAO, Z.; BOUCHNITA, A.; HELLANDER, A.; ZIKMUND, T.; ELEWA, A.; NEWTON, P. T.; FEI, J.; CHAGIN, A. S.; FRIED, K.; TANAKA, E. M.; KAISER, J.; SIMON, A.; ADAMEYKO, I. Altered developmental programs and oriented cell divisions lead to bulky bones during salamander limb regeneration. NATURE COMMUNICATIONS, 2022, vol. 13, no. 6949, p. 1-17. ISSN: 2041-1723.
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  TESAŘOVÁ, M.; MANCINI, L.; MAURI, E.; ALJANČIČ, G.; NĂPĂRUŞ-ALJANČIČ, M.; KOSTANJŠEK, R.; BIZJAK MALI, L.; ZIKMUND, T.; KAUCKÁ, M.; PAPI, F.; GOYENS, J.; BOUCHNITA, A.; HELLANDER, A.; ADAMEYKO, I.; KAISER, J. Living in darkness: Exploring adaptation of Proteus anguinus in 3 dimensions by X-ray imaging. GigaScience, 2022, vol. 11, no. 5, p. 1-8. ISSN: 2047-217X.
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  BOUDERLIQUE T.; PETERSEN J.; FAURE L. ABED-NAVANDI D.; BOUCHNITA A.; MUELLER B.; NAZAROV M.; ENGLMAIER L.; TESAŘOVÁ M.; FRADE P.R.; ZIKMUND T.; KOEHNE T.; KAISER J. FRIED K.; WILD C.; PANTOS O.; HELLANDER A.; BYTHELL J. and ADAMEKO I. Surface flow for colonial integration in reef-building corals. CURRENT BIOLOGY, 2022, vol. 32, no. 12, p. 1-27. ISSN: 0960-9822.
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  KAMENEVA P.; MELNIKOVA V.; KASTRITI M.E.; KURTOVA A.; KRYUKOV E.; MURTAZINA A.; FAURE L.; POVERENNAYA I.; ARTEMOV A.; KALININA T.; KUDRYASHOV N.; BADER M.; SKODA J.; CHLAPEK P.; CURYLOVA L.; SOURADA L. NERADIL J.; TESAŘOVÁ M.; GASPAR P.; YAKUSHOV V.D.; SHEFTEL B.I.; ZIKMUND T.; KAISER J.; FRIED K. ALENINA N.; VORONEZSHKAYA E. and ADAMEYKO I. Serotonin limits generation of chromaffin cells during adrenal organ development. NATURE COMMUNICATIONS, 2022, vol. 13, no. 1, p. 1-21. ISSN: 2041-1723.
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  MATULA, J.; POLÁKOVÁ, V.; ŠALPLACHTA, J.; TESAŘOVÁ, M.; ZIKMUND, T.; KAUCKÁ, M.; ADAMEYKO, I.; KAISER, J. Resolving complex cartilage structures in developmental biology via deep learning-based automatic segmentation of X-ray computed microtomography images. Scientific Reports, 2022, vol. 12, no. 1, p. 1-13. ISSN: 2045-2322.
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• 2021

  MATULA, J.; TESAŘOVÁ, M.; ZIKMUND, T.; KAUCKÁ, M.; ADAMEYKO, I.; KAISER, J. X-ray microtomography–based atlas of mouse cranial development. GigaScience, 2021, vol. 10, no. 3, p. 1-6. ISSN: 2047-217X.
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• 2020

  Tesarova, M.; Mancini, L.; Simon, A.; Adameyko, I .; Kaucka, M.; Elewa, A .; Lanzafame, G.; Zhang, Y.; Kalasova, D.; Szarowska, B.; Zikmund, T.; Novotna, M.; Kaiser, J. A quantitative analysis of 3D-cell distribution in regenerative muscle-skeletal system with synchrotron X-ray computed microtomography (vol 8, 14145, 2019). Scientific Reports. LONDON: NATURE PUBLISHING GROUP, 2020. ISSN: 2045-2322.
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  COMAI, G.; TESAŘOVÁ, M.; DUPÉ, V.; RHINN, M.; VALLECILLO-GARCÍA, P.; DA SILVA, F.; FERET, B.; EXELBY, K.; DOLLE, P.; CARLSSON, L.; PRYCE, B.; SPITZ, F.; STRICKER, S.; ZIKMUND, T.; KAISER, J.; BRISCOE, J.; SCHEDL, A.; GHYSELINCK, N.; SCHWEITZER, R.; TAJBAKHSH, S. Local retinoic acid signaling directs emergence of the extraocular muscle functional unit. PLOS BIOLOGY, 2020, vol. 18, no. 11, p. 1-33. ISSN: 1544-9173.
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• 2019

  TESAŘOVÁ M.; ZIKMUND T.; KAUCKÁ M.; ADAMEYKO I.; KAISER J. Use of the industrial X-ray computed microtomography to address scientific questions in developmental biology. The e-Journal of Nondestructive Testing, 2019, vol. 24, no. 3, p. 1-9. ISSN: 1435-4934.
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  TESAŘOVÁ, M.; HEUDE, E.; COMAI, G.; ZIKMUND, T.; KAUCKÁ, M.; ADAMEYKO, I.; TAJBAKHSH, S.; KAISER, J. An interactive and intuitive visualisation method for X-ray computed tomography data of biological samples in 3D Portable Document Format. Scientific Reports, 2019, vol. 2019, no. 9, p. 1-8. ISSN: 2045-2322.
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  TESAŘOVÁ, M.; ZIKMUND, T.; COMAI G.; HEUDE E.; KAUCKÁ M.; TAJBAKHSH S.; ADAMEYKO I.; KAISER, J. Application of industrial X-ray computed tomography for muscle-skeletal imaging at vertebrates. In Book of Abstracts Joint Retreat 2019. Hotel Luna, Kouty u Ledče nad Sázavou: Masarykova univerzita, 2019. p. 100-100. ISBN: 978-80-210-9300-3.
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  KAUCKÁ, M.; TESAŘOVÁ, M.; ZIKMUND, T.; KAISER, J.; ADAMEYKO, I. Genetic and Developmental Basis of Facial Individuality. JOURNAL OF MORPHOLOGY. Wiley, 2019. p. 10-11. ISSN: 0362-2525.
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  KAUCKÁ, M.; TESAŘOVÁ, M.; ZIKMUND, T.; KAISER, J.; ADAMEYKO, I. Oriented Clonal Cell Dynamics Enables Accurate Growth and Shaping of Mammalian Facial Cartilage. JOURNAL OF MORPHOLOGY. WILEY, 2019. p. 200-201. ISSN: 0362-2525.
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  ZIKMUND, T.; TESAŘOVÁ, M.; BUCHTOVÁ, M.; KAVKOVÁ, M.; HAMPL, M.; HRUBÁ, E.; KAUCKÁ, M.; ADAMEYKO, I.; KAISER, J. 3D-Quantitative Morphometrics in Craniofacial Development by Xray Computed Microtomography. JOURNAL OF MORPHOLOGY. WILEY, 2019. p. S243 (S244 p.)ISSN: 0362-2525.
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• 2018

  KAVKOVÁ, M.; ZIKMUND, T.; KAISER, J.; NOVOTNÁ, M.; TESAŘOVÁ, M. HIGH-RESOLUTION 3D IMAGING OF MOUSE BRAIN BY X-RAY COMPUTED MICROTOMOGRAPHY. XXVI International Symposium on Morphological Sciences 2018 - Book of Abstracts. Praha: 2018. p. 34-34. ISBN: 978-80-88214-11-3.
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  TESAŘOVÁ, M.; KAUCKÁ, M.; ADAMEYKO, I.; NOVOTNÁ, M.; ZIKMUND, T.; KAISER, J. Implementation of industrial approach of X-ray computed microtomography in developmental biology. XXVI International Symposium on Morphological Sciences 2018 - Book of Abstracts. 1st edition. Prague, Czech Republic: AMCA spol s.r.o., 2018. p. 73-73. ISBN: 978-80-88214-11-3.
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  KAUCKA, M.; PETERSEN, J.; TESAŘOVÁ, M.; SZAROWSKA, B.; KASTRITI, ME.; XIE, M.; KICHEVA, A.; ANNUSVER, K.; PAN, L.; SPITZ, F.; KAISER, J.; HOVORAKOVA, M.; ZIKMUND, T.; SUNADOME, K.; MATISE, MP.; WANG, H.; MARKLUND, U.; ABDO, H.; ERNFORS, P.; MAIRE, P.; WURMSER, M.; CHAGIN, AS.; FRIED, K.; ADAMEYKO, I. Signals from the brain and olfactory epithelium control shaping of the mammalian nasal capsule cartilage. eLife, 2018, vol. 7, no. 1, p. e34465 (e34465 p.)ISSN: 2050-084X.
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  HEUDE, E.; TESAŘOVÁ, M.; SEFTON, E. M.; JULLIAN, E.; ADACHI, N.; GRIMALDI, A.; ZIKMUND, T.; KAISER, J.; KARDON, G.; KELLY, R. G.; TAJBAKHSH, S. Unique morphogenetic signatures define mammalian neck muscles and associated connective tissues. eLife, 2018, no. 7, p. 1-26. ISSN: 2050-084X.
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  ZIKMUND, T.; NOVOTNÁ, M.; KAVKOVÁ, M.; TESAŘOVÁ, M.; KAUCKÁ, M.; SZAROWSKÁ, B.; ADAMEYKO, I.; HRUBÁ, E.; BUCHTOVÁ, M.; DRAŽANOVÁ, E.; STARČUK, Z.; KAISER, J. High-contrast differentiation resolution 3D imaging of rodent brain by X-ray computed microtomography. Journal of Instrumentation, 2018, vol. 13, no. 2, p. 1-12. ISSN: 1748-0221.
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  TESAŘOVÁ M., MANCINI L., SIMON A., ADAMEYKO I., KAUCKÁ M., ELEWA A., LANZAFAME G., ZHANG Y., KALASOVÁ D., SZAROWSKÁ B., ZIKMUND T., NOVOTNÁ M., KAISER J. A quantitative analysis of 3D-cell distribution in regenerating muscle-skeletal system with synchrotron X-ray computed microtomography. Scientific Reports, 2018, vol. 8, no. 1, p. 1-13. ISSN: 2045-2322.
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• 2017

  JAROŠ, J.; PETROV M.; TESAŘOVÁ, M.; HAMPL A. Revealing 3D Ultrastructure and Morphology of Stem Cell Spheroids by Electron Microscopy. In 3D Cell Culture: Methods and Protocols. 1. New York: Springer New York, 2017. p. 417-431. ISBN: 978-1-4939-7019-3.
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  KAUCKÁ, M.; ZIKMUND, T.; TESAŘOVÁ, M.; GYLLBORG, D.; HELLANDER, A.; JAROŠ, J.; KAISER, J.; PETERSEN, J.; SZAROWSKA, B.; NEWTON, P.T.; DYACHUK, V.; LI, L.; QIAN, H.; JOHANSSON, A-S.; MISHINA, Y.; CURRIE, J.; TANAKA, E.M.; ERICKSON, A.; DUDLEY, A.; BRISMAR, H.; SOUTHAM, P.; COEN, E.; CHEN, M.; WEINSTEIN, L.S.; HAMPL, A.; ARENAS, E.; CHAGIN, A.S.; FRIED, K.; ADAMEYKO, I. Oriented clonal cell dynamics enables accurate growth and shaping of vertebrate cartilage. eLife, 2017, vol. 6, no. 4, p. 1-82. ISSN: 2050-084X.
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  BŘÍNEK, A.; TESAŘOVÁ, M.; ZIKMUND, T.; KAISER, J. High resolution measuring with X- ray computed tomography. In Book of Abstracts CEITEC PhD Retreat II. Telč: 2017. p. 69-69. ISBN: 9788021085503.
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  Jaros, J.; Petrov, M.;Tesarova, M.; Hampl, A. Revealing 3D ultrastructure and morphology of stem cell spheroids by electron microscopy. Methods in Molecular Biology, 2017, vol. 1612, no. 1, p. 417-431. ISSN: 1940-6029.
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• 2016

  KAVKOVÁ, M.; TESAŘOVÁ, M.; ZIKMUND, T.; DRAŽANOVÁ, E.; KAUCKÁ, M.; BUCHTOVÁ, M.; KAISER, J. A comparison of X- ray computed tomography and magnetic resonance imaging of mouse brain. In 13th International Interdisciplinary Meeting on Bioanalysis. 2016. p. 137-140. ISBN: 978-80-904959-4- 4.
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  TESAŘOVÁ, M.; POŘÍZKA, P.; ŠEJNOHOVÁ, M.; ZIKMUND, T.; NOVOTNÝ, K.; SANCEY, L.; MOTTO-ROS, V.; TILLEMENT, O.; KAISER, J. Combination of X-ray micro-Computed tomography and laser- ablation based analytical techniques for 3D high resolution elemental mapping. In 13th International Interdisciplinary Meeting on Bioanalysis. 2016. p. 253-255. ISBN: 978-80-904959-4- 4.
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  KAUCKÁ, M.; IVASHKIN E.; GYLBORG, D.; ZIKMUND, T.; TESAŘOVÁ, M.; KAISER, J.; XIE, M.; PETERSEN, J.; PACHNIS, V.; NICLOIS, S.K.; YU, T.; SHARPE, P.; ARENAS, E.; BRISMAR, H.; BLOM, H.; CLEVERS, H.; SUTER, U.; CHAGIN, A.S.; FRIED, K.; HELLANDER, A.; ADAMEYKO, I. Analysis of neural crest-derived clones reveals novel aspects of facial development. Science Advances, 2016, vol. 2, no. 8, p. 1-16. ISSN: 2375-2548.
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  POŘÍZKA, P.; PROCHAZKA, D.; KLUS, J.; NOVOTNÝ, J.; TESAŘOVÁ, M.; KAISER, J. Capability of the stand-off LIBS device equipped with either echelle or Czerny- Turner spectrometer for rocks classification. Book of Abstracts of the 13th European Workshop on Laser Ablation. Hajdrichova 19, Sl-1000, Ljubljana, Slovenia: National institut of Chemistry Slovenia, 2016. p. 109-109. ISBN: 978-961-6104-31- 9.
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  POŘÍZKA, P.; ZIKMUND, T.; TESAŘOVÁ, M.; PROCHAZKA, D.; NOVOTNÝ, J.; KAISER, J. Utilization of Computed Tomography and Laser Spectroscopy for 3D High Resolution Mapping. Sborník 21. Slovensko-České spektroskopické konference. 2016. p. 51-51. ISBN: 978-80-553-2636-8.
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  TESAŘOVÁ, M.; ZIKMUND, T.; KAUCKÁ, M.; ADAMEYKO, I.; JAROŠ, J.; PALOUŠEK, D.; ŠKAROUPKA, D.; KAISER, J. Use of micro computed-tomography and 3D printing for reverse engineering of mouse embryo nasal capsule. Journal of Instrumentation, 2016, vol. 11, no. 3, p. 1-11. ISSN: 1748-0221.
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  KALASOVÁ, D.; ZIKMUND, T.; JAROŠ, J.; TESAŘOVÁ, M.; KAUCKÁ, M.; ADAMEYKO, I.; PALOUŠEK, D.; ŠKAROUPKA, D.; KAISER, J. Industrial Tomography System for Answering Biological Issues: Development of the Mouse Embryo Face. The e-Journal of Nondestructive Testing, 2016, no. 2016, p. 1-9. ISSN: 1435-4934.
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