Publication results

• 2025

  SEDLÁŘ, K.; HEŘMÁNKOVÁ, K.; UMAIR, M.; ŠABATOVÁ, K. Resources for Annotation of PolyHydroxyAlkanoate Synthases. 2025. 1 p.
  Detail

  SEDLÁŘ, K.; BUCHTÍKOVÁ, I.; HEŘMÁNKOVÁ, K.; BEZDÍČEK, M.; UMAIR, M.; KOUŘILOVÁ, X.; ŠABATOVÁ, K.; MUSILOVÁ, J.; ŠLOSÁROVÁ, K.; OBRUČA, S. Genes and Genomes coding PHA synthases. 12th European Symposium on Biopolymers Book of Abstracts. 2025. p. 32-32.
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  HEŘMÁNKOVÁ, K.; SEDLÁŘ, K.; ŠLOSÁROVÁ, K.; OBRUČA, S. From RNA-Seq to Regulatory Small RNAs in Non- Model Bacteria for Biotechnological Applications. Book of Abstracts ISMB/ECCB 2025. Liverpool, UK: 2025. p. 912-913.
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  HEŘMÁNKOVÁ, K.; BUCHTÍKOVÁ, I.; KOUŘILOVÁ, X.; OBRUČA, S.; SEDLÁŘ, K. Cze vs Ger: Comparing Post-Transcriptional Regulation in Two Strains of PHA Producing Caldimonas thermodepolymerans. Lisbon, Portugal: 2025. p. 105-105.
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  HEŘMÁNKOVÁ, K.; SEDLÁŘ, K. Structural and functional annotation of small RNA sequences in non-model bacteria. Telč: 1st Czech PhD Bioinformatics Conference, 2025.
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  SEDLÁŘ, K.; MUSILOVÁ, J.; HEŘMÁNKOVÁ, K.; VAFEK, Z.; ZIMMER, R.; HELIKAR, T. Predicting Gene Regulatory Networks with Augusta. ENBIK2025 Conference proceedings. 2025. p. 32-32. ISBN: 978-80-7592-292-2.
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  HEŘMÁNKOVÁ, K.; SEDLÁŘ, K.; ŠLOSÁROVÁ, K.; OBRUČA, S. Expression profiles of sRNA genes in Caldimonas thermodepolymerans. In Proceedings II of the 31th Conference STUDENT EEICT 2025. Brno: Brno University of Technology, 2025. p. 140-144. ISBN: 978-80-214-6320-2.
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  HEŘMÁNKOVÁ, K.; SEDLÁŘ, K. Decoding Polyhydroxyalkanoate Synthase Genes: Insights from Database Searches. Book of abstracts of the 12th International Conference on Chemical Technology. Praha: AMCA, spol. s.r.o., 2025. p. 152-153. ISBN: 978-80-88307-24.
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  MUSILOVÁ, J.; VAFEK, Z.; HEŘMÁNKOVÁ, K.; ZIMMER, R.; HELIKAR, T.; SEDLÁŘ, K. FAIRification of Augusta, a Python package for RNA-Seq-Based Inference of Gene Regulatory and Boolean Networks. ENBIK2025 Conference proceedings. 2025. p. 69-69. ISBN: 978-80-7592-292-2.
  Detail

• 2024

  HEŘMÁNKOVÁ, K.; KOUŘILOVÁ, X.; BUCHTÍKOVÁ, I.; OBRUČA, S.; SEDLÁŘ, K. PHA-Related Regulatory Small RNAs in Caldimonas Thermodepolymerans. 9th Meeting on Chemistry & Life for Sustainable Future Book of Abstracts. 1. 2024. p. 42-42.
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  HEŘMÁNKOVÁ, K.; KOUŘILOVÁ, X.; BUCHTÍKOVÁ, I.; OBRUČA, S.; SEDLÁŘ, K. Comparative Analysis of Small RNAs in Two PHA-Producing Bacteria. Studentská odborná konference Chemie je život 2024 Sborník abstraktů. 2024. p. 43-43. ISBN: 978-80-214-6298-4.
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  HEŘMÁNKOVÁ, K.; SEDLÁŘ, K. Co-expression analysis of small RNAs and untranslated regions in Rhodospirillum rubrum. Proceedings I of the 30 th Conference STUDENT EEICT 2024. 1. 2024. p. 113-116. ISBN: 978-80-214-6231-1.
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  HEŘMÁNKOVÁ, K.; KOUŘILOVÁ, X.; BUCHTÍKOVÁ, I.; OBRUČA, S.; SEDLÁŘ, K. Small RNA Analysis in Caldimonas thermodepolymerans Provides Insight into Non-Coding Regulatory Mechanisms. 11th International Conference on Chemical Technology Book of Abstracts. 1. 2024. p. 200-200. ISBN: 978-80-88214-48-9.
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  JUREČKOVÁ, K.; NYKRÝNOVÁ, M.; SLANINOVÁ, E.; FLEURIOT-BLITMAN, H.; AMSTUTZ, V.; HEŘMÁNKOVÁ, K.; BEZDÍČEK, M.; MRÁZOVÁ, K.; HRUBANOVÁ, K.; ZINN, M.; OBRUČA, S.; SEDLÁŘ, K. Cultivation driven transcriptomic changes in the wild-type and mutant strains of Rhodospirillum rubrum. Computational and Structural Biotechnology Journal, 2024, vol. 23, no. December 2024, p. 2681-2694. ISSN: 2001-0370.
  Detail | Full text in the Digital Library

  ŠABATOVÁ, K.; JAKUBÍČKOVÁ, M.; SLANINOVÁ, E.; FLEURIOT-BLITMAN, H.; AMSTUTZ, V.; HEŘMÁNKOVÁ, K.; ZINN, M.; OBRUČA, S.; SEDLÁŘ, K. Transcriptomic analysis of Rhodospirillum rubrum wild-type and mutant strains. 9th Meeting on Chemistry & Life. 2024.
  Detail

• 2023

  MUSILOVÁ, J.; KOUŘILOVÁ, X.; HEŘMÁNKOVÁ, K.; BEZDÍČEK, M.; IEREMENKO, A.; DVOŘÁK, P.; OBRUČA, S.; SEDLÁŘ, K. Genomic and Phenotypic Comparison of Polyhydroxyalkanoates Producing Strains of genus Caldimonas/Schlegelella. Computational and Structural Biotechnology Journal, 2023, vol. 21, no. November, p. 5372-5381. ISSN: 2001-0370.
  Detail | Full text in the Digital Library

  MUSILOVÁ, J.; VAFEK, Z.; HEŘMÁNKOVÁ, K.; KOUŘILOVÁ, X.; PERNICOVÁ, I.; OBRUČA, S.; PUNYIA, B.; HELIKAR, T.; SEDLÁŘ, K. Introducing Augusta, a Python package for inferring Gene Regulatory and Boolean Networks from RNA-Seq data, and its application to the Caldimonas thermodepolymerans DSM 15344T. 2023.
  Detail

  MUSILOVÁ, J.; KOUŘILOVÁ, X.; HEŘMÁNKOVÁ, K.; BEZDÍČEK, M.; OBRUČA, S.; SEDLÁŘ, K. Comparative genomic analysis of two Schlegelella species brings novel insights into polyhydroxyalkanoates production. 10th International Chemical-Technological Conference (ICCT), Mikulov, Czechia. 2023.
  Detail

• 2022

  HEŘMÁNKOVÁ, K.; SEDLÁŘ, K. The Pathway Analysis of Tepidimonas taiwanensis LMG 22826T, Polyhydroxyalkanoate and Alkaline Protease Producer. In Proceedings II of the 28st Conference STUDENT EEICT 2022: Selected papers. 1. Brno: Brno University of Technology, Faculty of Electrical Engineering and Communication, 2022. p. 166-169. ISBN: 978-80-214-6030-0.
  Detail

• 2021

  HEŘMÁNKOVÁ, K.; KOUŘILOVÁ, X.; PERNICOVÁ, I.; BEZDÍČEK, M.; LENGEROVÁ, M.; OBRUČA, S.; SEDLÁŘ, K. Complete Genome Sequence of the Type Strain Tepidimonas taiwanensis LMG 22826T, a Thermophilic Alkaline Protease and Polyhydroxyalkanoate Producer. Genome Biology and Evolution, 2021, vol. 13, no. 12, p. 1-5. ISSN: 1759-6653.
  Detail | Full text in the Digital Library

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