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Master's Thesis
Author of thesis: Bc. Filip Seč
Acad. year: 2025/2026
Supervisor: Ing. Anzhelika Mezina, Ph.D.
Reviewer: Ing. Martin Jonák, Ph.D.
This diploma thesis investigates deep learning methods for histopathological image analysis, focusing on prostate cancer grading from digitized whole-slide images. The main part of the work uses the PANDA dataset for slide-level ISUP grade prediction through multiple-instance learning and features extracted by frozen pathology foundation models. Four encoders are compared, and models combining their aligned feature representations are proposed, including residual gated fusion and counterfactual routing regularization. The best single-encoder model achieved a mean quadratically weighted kappa of 0.922 on PANDA. In external evaluation on SICAPv2, the best result was achieved by the model with counterfactual routing regularization, reaching QWK 0.884. Attention analysis further showed that the model generally assigned higher importance to tumour regions; however, neither attention weights nor routing weights should be treated as complete explanations of its decisions. The results show that pathology foundation models combined with multiple-instance learning provide a strong basis for prostate biopsy grading. They also highlight the importance of external validation and verification of model behaviour outside the development dataset.
digital pathology, histopathological images, prostate cancer, whole-slide image, deep learning, multiple-instance learning, pathology foundation models, ISUP grading, PANDA, SICAPv2
Date of defence
09.06.2026
Result of the defence
Defended (thesis was successfully defended)
Grading
A
Process of defence
Student prezentoval výsledky své práce a komise byla seznámena s posudky. Otázky oponenta: Mohl byste detailně objasnit princip „counterfactual gate regularization“? Student obhájil diplomovou práci a odpověděl na otázky členů komise a oponenta.
Language of thesis
Czech
Faculty
Fakulta elektrotechniky a komunikačních technologií
Department
Department of Telecommunications
Study programme
Communications and Informatics (MPC-TIT)
Composition of Committee
doc. Ing. Petr Mlýnek, Ph.D. (předseda) doc. Ing. Martin Vaculík, Ph.D. (místopředseda) doc. Ing. Pavel Šilhavý, Ph.D. (člen) doc. Ing. Martin Kyselák, Ph.D. (člen) Ing. Rudolf Vohnout, Ph.D. (člen) Ing. Pavel Bezpalec, Ph.D. (člen) Ing. Lukáš Benešl, Ph.D. (člen) Jakub Lešinský (člen) Ing. Viet Anh Phan (člen)
Supervisor’s reportIng. Anzhelika Mezina, Ph.D.
Grade proposed by supervisor: A
Reviewer’s reportIng. Martin Jonák, Ph.D.
Responsibility: Mgr. et Mgr. Hana Odstrčilová