Course detail
Bioinformatics
FIT-IV108Acad. year: 2018/2019
An advanced course in bioinformatics (lecture and computer lab) building upon elementary mol.biology and/or bioinformatics courses.
Language of instruction
Mode of study
Guarantor
Department
Learning outcomes of the course unit
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Planned learning activities and teaching methods
Assesment methods and criteria linked to learning outcomes
Course curriculum
Work placements
Aims
Specification of controlled education, way of implementation and compensation for absences
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Prerequisites and corequisites
Basic literature
Recommended reading
Classification of course in study plans
- Programme CSE-PHD-4 Doctoral
branch DVI4 , 0 year of study, winter semester, elective
- Programme CSE-PHD-4 Doctoral
branch DVI4 , 0 year of study, winter semester, elective
- Programme CSE-PHD-4 Doctoral
branch DVI4 , 0 year of study, winter semester, elective
- Programme CSE-PHD-4 Doctoral
branch DVI4 , 0 year of study, winter semester, elective
Type of course unit
Lecture
Teacher / Lecturer
Syllabus
2. Pattern matching (algoritms based on filtration and suffix arrays)
3. Heuristic algorithms for similarity searching in biological sequences (BLAST, BLAT, Pattern Hunter)
4. Regular expressions in bioinformatics
5. Algorithms for analysis and prediction of structural data (secondary strukture, contacts inb proteins, domain identification)
6. Algorithms for analysis and prediction of structural data (3D structure, structural comparisons)
7. Working with molecular structures in Pymol
8. New methods of DNA sequencing
9. Genome assembly and other operations on short nucleic acid sequences
10. Prediction of melting temperature in DNA and other nucleic acids (program mfold)
11. RNA secondary structure
12. DNA computing
13. Comparative genomics of human (analysis of scientific papers)
Guided consultation in combined form of studies
Teacher / Lecturer