Detail publikačního výsledku

Relationship of bacteria using comparison of whole genome sequences in frequency domain

KUBICOVÁ, V.; PROVAZNÍK, I.

Original Title

Relationship of bacteria using comparison of whole genome sequences in frequency domain

English Title

Relationship of bacteria using comparison of whole genome sequences in frequency domain

Type

Scopus Article

Original Abstract

We propose a new method for determination of relationship of bacteria based on whole genome data. The method compares whole genomic DNA sequences in frequency domain. The proposed method was tested on phyla level on 168 bacteria from four phyla and on order level – 121 bacteria from phylum Proteobacteria, class Gammaproteobacteria were classified. The classification on both levels was successful in more than 82%.

English abstract

We propose a new method for determination of relationship of bacteria based on whole genome data. The method compares whole genomic DNA sequences in frequency domain. The proposed method was tested on phyla level on 168 bacteria from four phyla and on order level – 121 bacteria from phylum Proteobacteria, class Gammaproteobacteria were classified. The classification on both levels was successful in more than 82%.

Keywords

relationship of bacteria, whole genome comparison, DNA spectrogram

Key words in English

relationship of bacteria, whole genome comparison, DNA spectrogram

Authors

KUBICOVÁ, V.; PROVAZNÍK, I.

RIV year

2015

Released

02.06.2014

Publisher

Springer International Publishing

ISBN

2194-5357

Periodical

Advances in Intelligent Systems and Computing

Volume

283

Number

6

State

Swiss Confederation

Pages from

397

Pages to

408

Pages count

12

Full text in the Digital Library

http://hdl.handle.net/

BibTex

@article{BUT107919,
  author="Vladimíra {Kubicová} and Valentýna {Provazník}",
  title="Relationship of bacteria using comparison of whole genome sequences in frequency domain",
  journal="Advances in Intelligent Systems and Computing",
  year="2014",
  volume="283",
  number="6",
  pages="397--408",
  doi="10.1007/978-3-319-06593-9\{_}35",
  issn="2194-5357"
}