Publication result detail

Similarity Of Cyanobacteria Based On The Comparison Of Whole Protein Coding Information

KUBICOVÁ, V.; PROVAZNÍK, I.

Original Title

Similarity Of Cyanobacteria Based On The Comparison Of Whole Protein Coding Information

English Title

Similarity Of Cyanobacteria Based On The Comparison Of Whole Protein Coding Information

Type

Paper in proceedings (conference paper)

Original Abstract

We present a method for determination of the similarity among cyanobacteria by comparing coding information in whole genome. This method is based on comparing orthologous genes of the analysed organisms. The number of the orthologous genes can be found by Needleman-Wunsch algorithm. There are two ways how to analyses orthologous genes: first is to rate the significance of diagonal plot, second is to count the number of genes with defined score. We constructed distance tree from number of orthologous genes with score more than 0.8. This distance tree was compared with two distance trees presented in literature.

English abstract

We present a method for determination of the similarity among cyanobacteria by comparing coding information in whole genome. This method is based on comparing orthologous genes of the analysed organisms. The number of the orthologous genes can be found by Needleman-Wunsch algorithm. There are two ways how to analyses orthologous genes: first is to rate the significance of diagonal plot, second is to count the number of genes with defined score. We constructed distance tree from number of orthologous genes with score more than 0.8. This distance tree was compared with two distance trees presented in literature.

Keywords

Cyanobacteria, protein coding regions, distance tree

Key words in English

Cyanobacteria, protein coding regions, distance tree

Authors

KUBICOVÁ, V.; PROVAZNÍK, I.

RIV year

2013

Released

30.05.2012

Publisher

LITERA Brno

Location

Brno

ISBN

978-80-7375-618-5

Book

Sborník příspěvků: XII. Pracovní setkání fyzikálních chemiků a elektrotechniků

Pages from

116

Pages to

118

Pages count

3

BibTex

@inproceedings{BUT93138,
  author="Vladimíra {Kubicová} and Valentýna {Provazník}",
  title="Similarity Of Cyanobacteria Based On The Comparison Of Whole Protein Coding Information",
  booktitle="Sborník příspěvků: XII. Pracovní setkání fyzikálních chemiků a elektrotechniků",
  year="2012",
  number="1.",
  pages="116--118",
  publisher="LITERA Brno",
  address="Brno",
  isbn="978-80-7375-618-5"
}