Publication result detail

Similarity/Dissimilarity Analysis of COI Mitochondrial Gene of Chosen Bird Species Based on Nucleotide Density

MADĚRÁNKOVÁ, D.; PROVAZNÍK, I.

Original Title

Similarity/Dissimilarity Analysis of COI Mitochondrial Gene of Chosen Bird Species Based on Nucleotide Density

English Title

Similarity/Dissimilarity Analysis of COI Mitochondrial Gene of Chosen Bird Species Based on Nucleotide Density

Type

Paper in proceedings (conference paper)

Original Abstract

Mitochondrial cytochrome c oxidase I (COI) genes may be used for DNA barcoding. It allows quick species identification of unknown sample. Intent of DNA barcoding is identification of new and closely related species. We report similarity/dissimilarity analysis of COI mitochondrial gene sequences of seventeen species of birds of prey. Their DNA sequences were represented in numerical form based on nucleotide densities. The similarity/dissimilarity analysis was based on evaluation of Euclidean distances between sequences. Results of similarity/dissimilarity analysis of sequences in numerical representation were also compared with phylogenetic three based on Jukes-Cantor method.

English abstract

Mitochondrial cytochrome c oxidase I (COI) genes may be used for DNA barcoding. It allows quick species identification of unknown sample. Intent of DNA barcoding is identification of new and closely related species. We report similarity/dissimilarity analysis of COI mitochondrial gene sequences of seventeen species of birds of prey. Their DNA sequences were represented in numerical form based on nucleotide densities. The similarity/dissimilarity analysis was based on evaluation of Euclidean distances between sequences. Results of similarity/dissimilarity analysis of sequences in numerical representation were also compared with phylogenetic three based on Jukes-Cantor method.

Keywords

COI gene, nucleotide density, similarity analysis

Key words in English

COI gene, nucleotide density, similarity analysis

Authors

MADĚRÁNKOVÁ, D.; PROVAZNÍK, I.

RIV year

2011

Released

02.11.2010

Publisher

IEEE

Location

Korfu

ISBN

978-1-4244-6560-6

Book

10th International Conference on Information Technology and Application in Biomedicine

Pages from

1

Pages to

4

Pages count

4

BibTex

@inproceedings{BUT24190,
  author="Denisa {Maděránková} and Valentýna {Provazník}",
  title="Similarity/Dissimilarity Analysis of COI Mitochondrial Gene of Chosen Bird Species Based on Nucleotide Density",
  booktitle="10th International Conference on Information Technology and Application in Biomedicine",
  year="2010",
  pages="1--4",
  publisher="IEEE",
  address="Korfu",
  isbn="978-1-4244-6560-6"
}