Publication result detail

3D Dense-U-Net for MRI brain tissue segmentation

KOLAŘÍK, M.; BURGET, R.; UHER, V.; DUTTA, M.

Original Title

3D Dense-U-Net for MRI brain tissue segmentation

English Title

3D Dense-U-Net for MRI brain tissue segmentation

Type

Paper in proceedings (conference paper)

Original Abstract

This paper presents a fully automatic method for 3D segmentation of brain tissue on MRI scans using modern deep learning approach and proposes 3D Dense-U-Net neural network architecture using densely connected layers. In contrast with many previous methods, our approach is capable of precise segmentation without any preprocessing of the input image and achieved accuracy 99.70 percent on testing data which outperformed human expert results. The architecture proposed in this paper can also be easily applied to any project already using U-net network as a segmentation algorithm to enhance its results. Implementation was done in Keras on Tensorflow backend and complete source-code was released online.

English abstract

This paper presents a fully automatic method for 3D segmentation of brain tissue on MRI scans using modern deep learning approach and proposes 3D Dense-U-Net neural network architecture using densely connected layers. In contrast with many previous methods, our approach is capable of precise segmentation without any preprocessing of the input image and achieved accuracy 99.70 percent on testing data which outperformed human expert results. The architecture proposed in this paper can also be easily applied to any project already using U-net network as a segmentation algorithm to enhance its results. Implementation was done in Keras on Tensorflow backend and complete source-code was released online.

Keywords

3D segmentation; brain; deep learning; imageprocessing; mri; neural networks; opensource; semantic segmentation; u-net

Key words in English

3D segmentation; brain; deep learning; imageprocessing; mri; neural networks; opensource; semantic segmentation; u-net

Authors

KOLAŘÍK, M.; BURGET, R.; UHER, V.; DUTTA, M.

RIV year

2019

Released

04.07.2018

Publisher

IEEE

Location

Athens, Greece

ISBN

978-1-5386-4695-3

Book

Proceedings of the 2018 41st International Conference on Telecommunications and Signal Processing (TSP)

Pages from

237

Pages to

240

Pages count

4

URL

https://ieeexplore.ieee.org/document/8441508

BibTex

@inproceedings{BUT148982,
  author="Martin {Kolařík} and Radim {Burget} and Václav {Uher} and Malay Kishore {Dutta}",
  title="3D Dense-U-Net for MRI brain tissue segmentation",
  booktitle="Proceedings of the 2018 41st International Conference on Telecommunications and Signal Processing (TSP)",
  year="2018",
  pages="237--240",
  publisher="IEEE",
  address="Athens, Greece",
  doi="10.1109/TSP.2018.8441508",
  isbn="978-1-5386-4695-3",
  url="https://ieeexplore.ieee.org/document/8441508"
}