R/Bioconductor package for identification of triplex-forming sequences

R/Bioconductor package for identification of triplex-forming sequences

Software

This package provides functions for identification and visualization of potential intramolecular triplex patterns in DNA sequence. The main functionality is to detect the positions of subsequences capable of folding into an intramolecular triplex (H-DNA) in a much larger sequence. The potential H-DNA (triplexes) should be made of as many cannonical nucleotide triplets as possible. The package includes visualization showing the exact base-pairing in 1D, 2D or 3D.

This package provides functions for identification and visualization of potential intramolecular triplex patterns in DNA sequence. The main functionality is to detect the positions of subsequences capable of folding into an intramolecular triplex (H-DNA) in a much larger sequence. The potential H-DNA (triplexes) should be made of as many cannonical nucleotide triplets as possible. The package includes visualization showing the exact base-pairing in 1D, 2D or 3D.

H-DNA; R/Bioconductor; pattern matching; dynamic programming; triplex; searching; annotation

H-DNA; R/Bioconductor; pattern matching; dynamic programming; triplex; searching; annotation

http://www.bioconductor.org/packages/release/bioc/html/triplex.html

Use of the result by another entity is possible without acquiring a license in some cases

http://www.bioconductor.org/packages/release/bioc/html/triplex.html