Publications

• 2023

  BOUCHAL, P.; DVOŘÁK, P.; HRTOŇ, M.; ROVENSKÁ, K.; CHMELÍK, R.; ŠIKOLA, T.; BOUCHAL, Z. Single-Shot Aspect Ratio and Orientation Imaging of Nanoparticles. ACS Photonics, 2023, vol. 10, no. 9, p. 3331-3341. ISSN: 2330-4022.
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  ŠURÁŇOVÁ, M.; ĎURIŠ, M.; ŠTENGLOVÁ NETÍKOVÁ, I.; BRÁBEK, J.; HORÁK, T.; JŮZOVÁ, V.; CHMELÍK, R.; VESELÝ, P. Primary assessment of medicines for expected migrastatic potential with holographic incoherent quantitative phase imaging. Biomedical Optics Express, 2023, vol. 14, no. 6, p. 2689-2708. ISSN: 2156-7085.
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  ĎURIŠ, M.; BOUCHAL, P.; CHMELÍK, R. Single-shot super-resolution quantitative phase imaging allowed by coherence gate shaping. APL Photonics, 2023, vol. 8, no. 4, p. 1-9. ISSN: 2378-0967.
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  ZICHA, D.; CHMELÍK, R. Testing anti-cancer drugs with holographic incoherent-light-source quantitative phase imaging. In Methods in Enzymology. 2023. p. 255-274. ISBN: 978-0-32-399264-0.
  Detail

• 2022

  HORÁK, T.; ŠURÁŇOVÁ, M.; ZICHA, D.; ŠTENGLOVÁ NETÍKOVÁ, I.; JŮZOVÁ, V.; CHMELÍK, R.; VESELÝ, P. Identification of Tumor Cells Behavior Changes by Holographic Incoherent-light-source Quantitative Phase Imaging Focuses on Migrastatics. Imaging Principles of Life - Book of abstracts. Institute of Molecular Genetics, 2022. p. 55-55.
  Detail

  ĎURIŠ, M.; BOUCHAL, P.; ROVENSKÁ, K.; CHMELÍK, R. Coherence-encoded synthetic aperture for super-resolution quantitative phase imaging. APL Photonics, 2022, vol. 7, no. 4, p. 1-10. ISSN: 2378-0967.
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  ŠURÁŇOVÁ, M.; ZÁBRANSKÁ, M.; KOLÍNKOVÁ, V.; MUCHOVÁ, N.; JŮZOVÁ, V.; CHMELÍK, R.; VESELÝ, P. Non-Invasive Imaging Method for Evaluating Effect of Migrastatics on Tumor Cells In Vitro Based on Coherence - Controlled Holographic Microscopy. 16th Multinational Congress on Microscopy, 04–09 September 2022, Brno, Czech Republic, 16MCM, BOOK ABSTRACT. Czechoslovak Microscopy Society: 16th Multinational Congress on Microscopy. Czechoslovak Microscopy Society, 2022. p. 532-533. ISBN: 978-80-11-02253-2.
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  HORÁK, T.; ŠURÁŇOVÁ, M.; ŠTENGLOVÁ NETÍKOVÁ, I.; ZICHA, D.; JŮZOVÁ, V.; CHMELÍK, R.; VESELÝ, P. Identification of Tumor Cells Behavior Changes by Holographic Incoherent-light-source Quantitative Phase Imaging Focuses on Migrastatics. 16th Multinational Congress on Microscopy, 04–09 September 2022, Brno, Czech Republic, 16MCM, BOOK ABSTRACT.: Czechoslovak Microscopy Society: 16th Multinational Congress on Microscopy., 2022.
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  ŠURÁŇOVÁ, M.; BRÁBEK, J.; ŠTENGLOVÁ NETÍKOVÁ, I.; CHMELÍK, R.; VESELÝ, P. Rapid In Vitro Screening Test of Tumour Cells Migratory Reactions to Potential Migrastatics. XXV. BIOLOGICKÉ DNY- Od nádorové biologie po precizní onkologii. Česko-Slovenská biologická společnost, z.s. 2022. Česko-Slovenská biologická společnost, z.s.: XXV. BIOLOGICKÉ DNY- Od nádorové biologie po precizní onkologii., 2022. p. 1-2.
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  ŠURÁŇOVÁ, M.; ZÁBRANSKÁ, M.; KOLÍNKOVÁ, V.; MUCHOVÁ, N.; JŮZOVÁ, V.; CHMELÍK, R.; VESELÝ, P. Advanced Microscopical Non-Invasive Examination of the Supposed Migrastatics for Impact on In Vitro Cell Migration. 5th European Conference of Oncology Pharmacy: European Conference of Oncology Pharmacy, 2022. p. 14-14.
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  HORÁK, T.; ŠURÁŇOVÁ, M.; ZICHA, D.; ŠTENGLOVÁ NETÍKOVÁ, I.; JŮZOVÁ, V.; CHMELÍK, R.; VESELÝ, P. Identification of Tumor Cells Behavior Changes by Holographic Incoherent-light-source Quantitative Phase Imaging Focuses on Migrastatics. 2022.
  Detail

• 2021

  ŠURÁŇOVÁ, M.; ZICHA, D.; VESELÝ, P.; BRÁBEK, J.; JŮZOVÁ, V.; CHMELÍK, R. In Vitro Screening with Holographic Incoherent Quantitative Phase Imaging Focuses on Finding Medicaments for Repurposing as Anti-Metastatic Agents Designated as Migrastatics. In Optics InfoBase, OSA’s Digital Library: European Conferences on Biomedical Optics (2021). Optics InfoBase Conference Papers. Optics InfoBase, OSA’s Digital Library: Optics InfoBase, OSA’s Digital Library, 2021. p. 1-3. ISBN: 978-15-5752-820-9. ISSN: 2162-2701.
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  ŠURÁŇOVÁ, M.; ČERNÁ, E.; KRAJŇÁK, T.; VOJTOVÁ, L.; ŠAMOŘIL, T.; VESELÝ, P.; CHMELÍK, R.; ZICHA, D. Exploration of the potential for nanostructured hydrogel surface in prevention of cell upregulating cytoskeletal structures and loosing transparency. Journal of Physical Chemistry & Biophysics, ISSN 2155-9570, 2021. p. 50-51.
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  FORDEY, T.; BOUCHAL, P.; SCHOVÁNEK, P.; BARÁNEK, M.; BOUCHAL, Z.; DVOŘÁK, P.; HRTOŇ, M.; ROVENSKÁ, K.; LIGMAJER, F.; CHMELÍK, R.; ŠIKOLA, T. Single-Shot Three-Dimensional Orientation Imaging of Nanorods Using Spin to Orbital Angular Momentum Conversion. Nano Letters, 2021, vol. 21, no. 17, p. 7244-7251. ISSN: 1530-6992.
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  BOUCHAL, P.; CHMELÍK, R.; BOUCHAL, Z. Phase of white light and its compatibility to the optical path. OPTICS EXPRESS, 2021, vol. 29, no. 8, p. 12398-12412. ISSN: 1094-4087.
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  ĎURIŠ, M.; CHMELÍK, R. Coherence gate manipulation for enhanced imaging through scattering media by non-ballistic light in partially coherent interferometric systems. OPTICS LETTERS, 2021, vol. 46, no. 18, p. 4486-4489. ISSN: 0146-9592.
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  ŠURÁŇOVÁ, M.; ZICHA, D.; VESELÝ, P.; BRÁBEK, J.; JŮZOVÁ, V.; CHMELÍK, R. In-vitro screening with holographic incoherent quantitative phase imaging focuses on finding medicaments for repurposing as anti-metastatic agents designated as migrastatics. In Progress in Biomedical Optics and Imaging - Proceedings of SPIE. 2021. p. 1-3. ISBN: 978-15-1064-708-4.
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  ĎURIŠ, M.; CHMELÍK, R. Super-Resolution in coherence-controlled holographic microscope using synthetic aperture approach. In Optics InfoBase Conference Papers. Optica Publishing Group, 2021. p. 1-2. ISBN: 978-15-5752-820-9.
  Detail

• 2020

  DVOŘÁK, P.; ROVENSKÁ, K.; LIGMAJER, F.; CHMELÍK, R.; ŠIKOLA, T. Optické metapovrchy a 2D optika. Československý časopis pro fyziku, 2020, vol. 70, no. 5, p. 323-325. ISSN: 0009-0700.
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  ŠTRBKOVÁ, L.; CARSON, B.; VINCENT, T.; VESELÝ, P.; CHMELÍK, R. Automated interpretation of time-lapse quantitative phase image by machine learning to study cellular dynamics during epithelial-mesenchymal transition. JOURNAL OF BIOMEDICAL OPTICS, 2020, vol. 25, no. 8, p. 1-18. ISSN: 1560-2281.
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  PALUŠOVÁ, V.; RENZOVÁ, T.; VERLANDE, A.; VACLOVÁ, T.; MEDKOVÁ, M.; CETLOVÁ, L.; SEDLÁČKOVÁ, M.; HŘÍBKOVÁ, H.; SLANINOVÁ, I.; KRUTÁ, M.; ROTREKL, V.; UHLÍŘOVÁ, H.; KŘÍŽOVÁ, A.; CHMELÍK, R.; VESELÝ, P.; KRAFČÍKOVÁ, M.; TRANTÍREK, L.; SCHINK, K.; ULDRIJAN, S. Dual Targeting of BRAF and mTOR Signaling in Melanoma Cells with Pyridinyl Imidazole Compounds. Cancers, 2020, vol. 12, no. 6, p. 1-24. ISSN: 2072-6694.
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  Sheridan, JT.; Kostuk, RK.; Gil, AF.; Wang, Y.; Lu, W.; Zhong, H.; Tomita, Y.; Neipp, C.; Frances, J.; Gallego, S.; Pascual, I.; Marinova, V.; Lin, SH.; Hsu, KY.; Bruder, F.; Hansen, S.; Manecke, C.; Meisenheimer, R.; Rewitz, C.; Rolle, T.; Odinokov, S.; Matoba, O.; Kumar, M.; Quan, X.; Awatsuji, Y.; Wachulak, PW.; Gorelaya, AV.; Sevryugin, AA.; Shalymov, EV.; Venediktov, VY.; Chmelik, R.; Ferrara, MA.; Coppola, G.; Marquez, A.; Belendez, A.; Yang, W.; Yuste, R.; Bianco, A.; Zanutta, A.; Falldorf, C.; Healy. Roadmap on holography. Journal of Optics, 2020, vol. 22, no. 12, p. 28-29. ISSN: 2040-8986.
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  ĎURIŠ, M.; CHMELÍK, R. Quantitative phase image enhancement by smart coherence gate manipulation in partially coherent holographic microscope. 2020.
  Detail

• 2019

  BOUCHAL, P.; ŠTRBKOVÁ, L.; DOSTÁL, Z.; CHMELÍK, R.; BOUCHAL, Z. Geometric-Phase Microscopy for Quantitative Phase Imaging of Isotropic, Birefringent and Space-Variant Polarization Samples. Scientific Reports, 2019, vol. 9, no. 1, p. 1-11. ISSN: 2045-2322.
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  BOUCHAL, P.; DVOŘÁK, P.; BABOCKÝ, J.; BOUCHAL, Z.; LIGMAJER, F.; HRTOŇ, M.; KŘÁPEK, V.; FAßBENDER, A.; LINDEN, S.; CHMELÍK, R.; ŠIKOLA, T. Kvantitativní fázové měření plazmonických metapovrchů pomocí geometricko-fázové holografické mikroskopie. Jemná mechanika a optika, 2019, vol. 64, no. 4, p. 95-98. ISSN: 0447-6441.
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  ĎURIŠ, M.; CHMELÍK, R. Robust Method for Quantitative Phase Image Synthesis out of Coherence-gated Multiply Scattered Light. Digital Holography and Three-Dimensional Imaging 2019. OSA Technical Digest (Optical Society of America, 2019), 2019. ISBN: 978-1-943580-59-0.
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  BOUCHAL, P.; DVOŘÁK, P.; BABOCKÝ, J.; BOUCHAL, Z.; LIGMAJER, F.; HRTOŇ, M.; KŘÁPEK, V.; FAßBENDER, A.; LINDEN, S.; CHMELÍK, R.; ŠIKOLA, T. Geometric-Phase Microscopy for Quantitative Phase Imaging of Plasmonic Metasurfaces. 2019. p. 1-2. ISBN: ISBN: 978-1-943580-5.
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  ŠTRBKOVÁ, L.; VESELÝ, P.; CHMELÍK, R. Classification of cells in time-lapse quantitative phase image by supervised machine learning. Digital Holography and Three-Dimensional Imaging 2019. OSA Technical Digest (Optical Society of America, 2019), 2019. ISBN: 978-194358059-0.
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  DOSTÁL, Z.; KOLMAN, P.; CHMELÍK, R. Automated alignment for fluorescence holographic microscope. In Optics InfoBase Conference Papers. 2019. p. Th3A.2.-1 (Th3A.2.-2 p.)ISBN: 978-1-943580-59-0.
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  BOUCHAL, P.; DVOŘÁK, P.; BABOCKÝ, J.; BOUCHAL, Z.; LIGMAJER, F.; HRTOŇ, M.; KŘÁPEK, V.; FAßBENDER, A.; LINDEN, S.; CHMELÍK, R.; ŠIKOLA, T. High-Resolution Quantitative Phase Imaging of Plasmonic Metasurfaces with Sensitivity down to a Single Nanoantenna. NANO LETTERS, 2019, vol. 19, no. 2, p. 1242-1250. ISSN: 1530-6984.
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• 2018

  UHLÍŘOVÁ, H.; TIAN, P.; KILIC, K.; THUNEMANN, M.; SRIDHAR, V.; CHMELÍK, R.; BARTSCH, H.; DALE, A.; DEVOR, A.; SAISAN, P. Neurovascular network explorer 2.0: A simple tool for exploring and sharing a database of optogenetically-evoked vasomotion in mouse cortex in vivo. Journal of visualized experiments : JoVE, 2018, vol. 2018, no. 135, p. 1-9. ISSN: 1940-087X.
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  CHMELÍK, R.; ĎURIŠ, M.; ŠTRBKOVÁ, L. Quantitative phase imaging in turbid media by coherence controlled holographic microscopy. In Unconventional Optical Imaging. Proceedings of SPIE. Strasbourg, France: Society of Photo-Optical Instrumentation Engineers (SPIE), 2018. p. 1-12. ISSN: 0277-786X.
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  BOUCHAL, P.; CHMELÍK, R.; BOUCHAL, Z. Dual-polarization interference microscopy for advanced quantification of phase associated with the image field. Optics Letters, 2018, vol. 43, no. 3, p. 427-430. ISSN: 1539-4794.
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  TOLDE, O.; GANDALOVIČOVÁ, A.; KŘÍŽOVÁ, A.; VESELÝ, P.; CHMELÍK, R.; RÖSEL, D.; BRÁBEK, J. Quantitative phase imaging unravels new insight into dynamics of mesenchymal and amoeboid cancer cell invasion. Scientific Reports, 2018, no. 8, p. 1-13. ISSN: 2045-2322.
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• 2017

  ŠTRBKOVÁ, L.; ZICHA, D.; VESELÝ, P.; CHMELÍK, R. Automated classification of cell morphology by coherence-controlled holographic microscopy. JOURNAL OF BIOMEDICAL OPTICS, 2017, vol. 22, no. 8, p. 086008-1 (086008-9 p.)ISSN: 1083-3668.
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  BABOCKÝ, J.; KŘÍŽOVÁ, A.; ŠTRBKOVÁ, L.; KEJÍK, L.; LIGMAJER, F.; HRTOŇ, M.; DVOŘÁK, P.; TÝČ, M.; ČOLLÁKOVÁ, J.; KŘÁPEK, V.; KALOUSEK, R.; CHMELÍK, R.; ŠIKOLA, T. Quantitative 3D phase imaging of plasmonic metasurfaces. ACS Photonics, 2017, vol. 4, no. 6, p. 1389-1397. ISSN: 2330-4022.
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  ŠTRBKOVÁ, L.; VESELÝ, P.; CHMELÍK, R. The role of digital holographic microscopy in the classification of cellular morphologies. Focus on microscopy 2017. Bordeaux, France: 2017. p. 472-472.
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  GÁL, B.; VESELÝ, M.; ČOLLÁKOVÁ, J.; NEKULOVÁ, M.; JŮZOVÁ, V.; CHMELÍK, R.; VESELÝ, P. Distinctive behaviour of live biopsy-derived carcinoma cells unveiled using coherence-controlled holographic microscopy. PLOS ONE, 2017, vol. 12, no. 8, p. 1-14. ISSN: 1932-6203.
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• 2016

  ŠTRBKOVÁ, L.; MANAKHOV, A.; ZAJÍČKOVÁ, L.; STOICA, A.; VESELÝ, P.; CHMELÍK, R. The adhesion of normal human dermal fibroblasts to the cyclopropylamine plasma polymers studied by holographic microscopy. Surface and Coatings Technology, 2016, vol. 295, no. -, p. 70-77. ISSN: 0257-8972.
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  ANTOŠ, M.; BOUCHAL, P.; DOSTÁL, Z.; ŠTRBKOVÁ, L.; KVASNICA, L.; KOLMAN, P.; CHMELÍK, R. Mikroskopie v Laboratoři experimentální biofotoniky. Jemná mechanika a optika, 2016, vol. 61, no. 6, p. 135-139. ISSN: 0447-6441.
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  CHMELÍK, R. Výzkum holografických mikrotechnologií. 2016. p. 1-2.
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  CHMELÍK, R.; PETRÁČEK, J.; SLABÁ, M.; KOLLÁROVÁ, V.; SLABÝ, T.; ČOLLÁKOVÁ, J.; KOMRSKA, J.; DOSTÁL, Z.; VESELÝ, P. Holographic microscopy in low coherence. In QUANTITATIVE PHASE IMAGING II. Proceedings of SPIE. 2016. p. 971806-1 (971806-7 p.)ISBN: 978-1-62841-952-8. ISSN: 0277-786X.
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  LOŠŤÁK, M.; CHMELÍK, R. Coherence-controlled holographic microscopy principle embodiment into Q-PHASE microscope: story of a successful technology transfer. In QUANTITATIVE PHASE IMAGING II. Proceedings of SPIE. 2016. p. 971816-1 (971816-6 p.)ISBN: 978-1-62841-952-8. ISSN: 0277-786X.
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  LOŠŤÁK, M.; ČOLLÁKOVÁ, J.; SLABÝ, T.; KŘÍŽOVÁ, A.; VESELÝ, P.; CHMELÍK, R. Coherence-controlled holographic microscopy for live-cell quantitative phase imaging in turbid media. In QUANTITATIVE PHASE IMAGING II. Proceedings of SPIE. 2016. p. 97181Y-1 (97181Y-5 p.)ISBN: 978-1-62841-952-8. ISSN: 0277-786X.
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  ŠTRBKOVÁ, L.; MANAKHOV, A.; VESELÝ, P.; CHMELÍK, R. Biocompatibility of Thin Films Studied by Q-Phase. In 3D Image Acquisition and Display: Technology, Perception and Applications 2016. Optical Society of America, 2016. p. JW4A-49-1 (JW4A-49-3 p.)ISBN: 978-1-943580-15-6.
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• 2015

  TRUNEC, M.; MACA, K.; CHMELÍK, R. Polycrystalline alumina ceramics doped with nanoparticles for increased transparency. Journal of the European Ceramic Society, 2015, vol. 35, no. 3, p. 1001-1009. ISSN: 0955-2219.
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  BALVAN, J.; KŘÍŽOVÁ, A.; GUMULEC, J.; RAUDENSKÁ, M.; SLÁDEK, Z.; SEDLÁČKOVÁ, M.; BABULA, P.; SZTALMACHOVÁ, M.; KIZEK, R.; CHMELÍK, R.; MASAŘÍK, M. Multimodal Holographic Microscopy: Distinction between Apoptosis and Oncosis. PLOS ONE, 2015, vol. 10, no. 3, p. 1-16. ISSN: 1932-6203.
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  ŠTRBKOVÁ, L.; CHMELÍK, R.; VESELÝ, P. Biocompatibility assessment of cyclopropylamine plasma polymers studied by coherence- controlled holographic microscopy. Focus on microscopy 2015. Göttingen, Germany: 2015. ISBN: 978-3-95404- 942.
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  KOLLÁROVÁ, V.; ČOLLÁKOVÁ, J.; DOSTÁL, Z.; VESELÝ, P.; CHMELÍK, R. Quantitative phase imaging through scattering media by means of coherence-controlled holographic microscope. JOURNAL OF BIOMEDICAL OPTICS, 2015, vol. 20, no. 11, p. 1112016-1 (111206-8 p.)ISSN: 1083-3668.
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  ČOLLÁKOVÁ, J.; KŘÍŽOVÁ, A.; KOLLÁROVÁ, V.; DOSTÁL, Z.; SLABÁ, M.; VESELÝ, P.; CHMELÍK, R. Coherence-controlled holographic microscopy enabled recognition of necrosis as the mechanism of cancer cells death after exposure to cytopathic turbid emulsion. JOURNAL OF BIOMEDICAL OPTICS, 2015, vol. 20, no. 11, p. 111213-1 (111213-7 p.)ISSN: 1083-3668.
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  KŘÍŽOVÁ, A.; ČOLLÁKOVÁ, J.; DOSTÁL, Z.; KVASNICA, L.; UHLÍŘOVÁ, H.; ZIKMUND, T.; VESELÝ, P.; CHMELÍK, R. Dynamic phase differences based on quantitative phase imaging for the objective evaluation of cell behavior. JOURNAL OF BIOMEDICAL OPTICS, 2015, vol. 20, no. 11, p. 111214-1 (111214-8 p.)ISSN: 1083-3668.
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  KŘÍŽOVÁ, A.; BALVAN, J.; GUMULEC, J.; SLABÝ, T.; MASAŘÍK, M.; CHMELÍK, R. Cell death type identification by quantitative phase imaging. MOLECULAR BIOLOGY OF THE CELL. 2015. p. P1553 ( p.)ISSN: 1059-1524.
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  KOLLÁROVÁ, V.; ČOLLÁKOVÁ, J.; DOSTÁL, Z.; SLABÝ, T.; VESELÝ, P.; CHMELÍK, R. Quantitative phase imaging through scattering media. In Quantitative Phase Imaging. San Francisco, CA: SPIE-INT SOC OPTICAL ENGINEERING, 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227- 0010 USA, 2015. p. 93360T- 1 (93360T-8 p.)ISBN: 978-1-62841-426- 4.
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  SLABÝ, T.; KŘÍŽOVÁ, A.; LOŠŤÁK, M.; ČOLLÁKOVÁ, J.; VESELÝ, P.; CHMELÍK, R. Coherence-controlled holographic microscopy for live- cell quantitative, phase imaging. In Quantitative Phase Imaging. San Francisco, CA: SPIE-INT SOC OPTICAL ENGINEERING, 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227- 0010 USA, 2015. p. 93360K- 1 (93360K-4 p.)ISBN: 978-1-62841-426- 4.
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  DOSTÁL, Z.; SLABÝ, T.; KVASNICA, L.; LOŠŤÁK, M.; KŘÍŽOVÁ, A.; CHMELÍK, R. Automated alignment method for coherence-controlled holographic microscope. JOURNAL OF BIOMEDICAL OPTICS, 2015, vol. 20, no. 11, p. 1-8. ISSN: 1083-3668.
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  PLÖSCHNER, M.; KOLLÁROVÁ, V.; DOSTÁL, Z.; NYLK, J.; BARTON-OWEN, T.; FERRIER, D.; CHMELÍK, R.; DHOLAKIA, K.; ČIŽMÁR, T. Multimode fibre: Light-sheet microscopy at the tip of a needle. Scientific Reports, 2015, vol. 5, no. 1, p. 1-7. ISSN: 2045-2322.
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• 2014

  KOLLÁROVÁ, V.; LOŠŤÁK, M.; SLABÁ, M.; SLABÝ, T.; ČOLLÁKOVÁ, J.; DOSTÁL, Z.; KŘÍŽOVÁ, A.; ŠTRBKOVÁ, L.; CHMELÍK, R. Imaging of 2D objects through diffuse media by coherence controlled holographic microscope. In Digital Holography and Three- Dimensional Imaging. Seattle, Washington United States: Optical Society of America, 2014. p. - (- p.)ISBN: 978-1-55752-308- 2.
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  BOUCHAL, P.; BOUCHAL, Z.; CHMELÍK, R. Jednocestná nekoherentní korelační mikroskopie: metody, aplikace a výzkum v Centru digitální optiky TA ČR. Jemná mechanika a optika, 2014, vol. 59, no. 6-7/ 2014, p. 184-186. ISSN: 0447- 6441.
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  ZIKMUND, T.; KVASNICA, L.; TÝČ, M.; KŘÍŽOVÁ, A.; ČOLLÁKOVÁ, J.; CHMELÍK, R. Sequential processing of quantitative phase images for the study of cell behaviour in real-time digital holographic microscopy. Journal of Microscopy, 2014, vol. 256, no. 2, p. 117-125. ISSN: 0022-2720.
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  ČOLLÁKOVÁ, J.; KŘÍŽOVÁ, A.; DOSTÁL, Z.; ANTOŠ, M.; VAŠÍČEK, D.; CHMELÍK, R. Multimodální holografický mikroskop - společný projekt VUT a TESCAN. Jemná mechanika a optika, 2014, vol. 59, no. 6-7/ 2014, p. 160-162. ISSN: 0447- 6441.
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  CHMELÍK, R.; SLABÁ, M.; KOLLÁROVÁ, V.; SLABÝ, T.; LOŠŤÁK, M.; ČOLLÁKOVÁ, J.; DOSTÁL, Z. The Role of Coherence in Image Formation in Holographic Microscopy. PROGRESS IN OPTICS, 2014, vol. 59, no. 1, p. 267-336. ISSN: 0079-6638.
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  LOŠŤÁK, M.; CHMELÍK, R.; SLABÁ, M.; SLABÝ, T. Coherence-controlled holographic microscopy in diffuse media. OPTICS EXPRESS, 2014, vol. 22, no. 4, p. 4180-4195. ISSN: 1094-4087.
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  ŠTRBKOVÁ, L.; KŘÍŽOVÁ, A.; ČOLLÁKOVÁ, J.; CHMELÍK, R.; VESELÝ, P. Dynamic phase differences method for the assessment of cellular dynamic processes. Book of Abstracts CEITEC Annual Conference. Brno: Muni PRESS, 2014. p. 109-109. ISBN: 978-80-210-7159- 9.
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• 2013

  ANTOŠ, M.; ČOLLÁKOVÁ, J.; CHMELÍK, R. Inkubační zařízení k pozorování buněk v koherencí řízeném holografickém mikroskopu. Jemná mechanika a optika, 2013, vol. 58, no. 6, p. 174-177. ISSN: 0447- 6441.
  Detail

  TÝC, M.; KVASNICA, L.; SLABÁ, M.; CHMELÍK, R. Numerical refocusing in digital holographic microscopy with extended-sources illumination. OPTICS EXPRESS, 2013, vol. 21, no. 23, p. 28258-28271. ISSN: 1094-4087.
  Detail

  SLABÝ, T.; KOLMAN, P.; DOSTÁL, Z.; ANTOŠ, M.; LOŠŤÁK, M.; CHMELÍK, R. Off-axis setup taking full advantage of incoherent illumination in coherence-controlled holographic microscope. OPTICS EXPRESS, 2013, vol. 21, no. 12, p. 14747-14762. ISSN: 1094-4087.
  Detail

  KRÍŽOVÁ, A.; COLLÁKOVÁ, J.; CHMELÍK, R. Koherencí řízený holografický mikroskop a jeho aplikace na ÚFI VUT v Brně. Jemná mechanika a optika, 2013, vol. 58, no. 6, p. 171-173. ISSN: 0447- 6441.
  Detail

• 2012

  HENZLOVÁ, M.; LOŠŤÁK, M.; CHMELÍK, R. Theoretical study of coherence-controlled holographic microscopy in the presence of scattering media. In Proceedings of SPIE, Volume 8697. Proceedings of SPIE. SPIE, 2012. p. 869713-1 (869713-8 p.)ISBN: 978-80-244-3193-2. ISSN: 0277-786X.
  Detail

  CHMELÍK, R. Coherent Imaging with Incoherent Light Coherent Imaging with Incoherent Light in Digital Holographic Microscopy. In Proceedings of SPIE, Volume 8697. Proceedings of SPIE. SPIE, 2012. p. 869711-1 (869711-7 p.)ISBN: 978-80-244-3193-2. ISSN: 0277-786X.
  Detail

  KOLMAN, P.; UHLÍŘOVÁ, H.; LOVICAR, L.; CHMELÍK, R. Coherence- controlled holographic microscope. 2012. p. 10-10.
  Detail

  ANTOŠ, M.; ČOLLÁKOVÁ, J.; VESELÝ, P.; CHMELÍK, R.; KŘÍŽOVÁ, A. System for coherence-controlled holographic microscopy of living cells. In Proceedings of SPIE. Proceedings of SPIE. SPIE, 2012. p. 869712-1 (869712-6 p.)ISBN: 978-80-244-3408-7. ISSN: 0277-786X.
  Detail

• 2011

  BOUCHAL, P.; KAPITÁN, J.; CHMELÍK, R.; BOUCHAL, Z. Point spread function and two- point resolution in Fresnel incoherent correlation holography. OPTICS EXPRESS, 2011, vol. 19, no. 16, p. 15603-15620. ISSN: 1094- 4087.
  Detail | WWW

  CHMELÍK, R. Advances in Digital Holographic Microscopy: Coherence- Controlled Microscope. In Proceedings of SPIE. Proceedings of SPIE. BELLINGHAM, USA: SPIE-INT SOC OPTICAL ENGINEERING, 1000 20TH ST, PO BOX 10, BELLINGHAM, WA 98227- 0010 USA, 2011. p. 807402- 1 (807402-7 p.)ISBN: 9780819486646. ISSN: 0277- 786X.
  Detail | WWW

• 2010

  LOVICAR, L.; KOMRSKA, J.; CHMELÍK, R. Quantitative-phase-contrast imaging of a two- level surface described as a 2D linear filtering process. OPTICS EXPRESS, 2010, vol. 18, no. 20, p. 20585-20594. ISSN: 1094- 4087.
  Detail

  SLABÝ, T.; ANTOŠ, M.; DOSTÁL, Z.; KOLMAN, P.; CHMELÍK, R. Coherence- controlled holographic microscope. In Proceedings of SPIE, Volume 7746. Proceedings of SPIE. SPIE, 2010. p. 77461R- 1 (77461R-8 p.)ISBN: 9780819482365. ISSN: 0277- 786X.
  Detail

  KOLMAN, P.; CHMELÍK, R. Coherence- controlled holographic microscope. OPTICS EXPRESS, 2010, vol. 18, no. 21, p. 21990-22003. ISSN: 1094- 4087.
  Detail | WWW

  ZIKMUND, T.; KVASNICA, L.; LOVICAR, L.; UHLÍŘOVÁ, H.; CHMELÍK, R. Dynamical Deformation Compensation of Phase in Digital Holographic Microscopy. In Proceedings of SPIE, Volume 7746. Proceedings of SPIE. SPIE, 2010. p. 77460K- 1 (77460K-7 p.)ISBN: 9780819482365. ISSN: 0277- 786X.
  Detail

• 2009

  JANEČKOVÁ, H.; VESELÝ, P.; CHMELÍK, R. Proving Tumour Cells by Acute Nutritional/Energy Deprivation as a Survival Threat: A Task for Microscopy. ANTICANCER RESEARCH, 2009, vol. 29, no. 6, p. 2339-2345. ISSN: 0250- 7005.
  Detail | WWW

  KOLMAN, P.; UHLÍŘOVÁ, H.; CHMELÍK, R. Digitální holografická mikroskopie na ÚFI, VUT v Brně. Jemná mechanika a optika, 2009, vol. 2009, no. 7- 8, p. 193-232. ISSN: 0447- 6441.
  Detail

• 2008

  TOMANEC, O.; HRNČÍŘ, T.; LOVICAR, L.; ŠUSTR, L.; BŘÍNEK, L.; KALOUSEK, R.; CHMELÍK, R.; SPOUSTA, J.; ŠIKOLA, T. Studium vlastností mikro- a nanostruktur v oblasti plazmoniky na Ústavu fyzikálního inženýrství FSI VUT v Brně. Jemná mechanika a optika, 2008, vol. 52, no. 6, p. 187-189. ISSN: 0447- 6441.
  Detail

• 2007

  MACA, K.; TRUNEC, M.; CHMELÍK, R. Processing and properties of fine- grained transparent MgAl2O4 ceramics. Ceramics- Silikáty, 2007, vol. 51, no. 2, p. 94-97. ISSN: 0862- 5468.
  Detail

  KOLMAN, P.; UHLÍŘOVÁ, H.; CHMELÍK, R.; VESELÝ, P.; LOVICAR, L.; FORET, Z. In vitro dynamic observations in a low- coherence holographic microscope. In Proceedings SPIE. Proceedings of SPIE. Czech & Slovak Soc Photon, Tech Univ Liberec, Fac Mech Engn, Agcy Act M, SPIE Czech & Slovak Chapter, Palacky Univ, Fac: Miler, M; Senderakova, D; Hrabovsky, M, 2007. p. M6090 (M6090 p.)ISBN: 9780819467485. ISSN: 0277- 786X.
  Detail

  LOVICAR, L.; CHMELÍK, R.; KOMRSKA, J.; MATOUŠKOVÁ, V.; KOLMAN, P.; FORET, Z. Some factors that affect the surface measurement accuracy of a low- coherence interference microscope. In 15th Czech-Polish- Slovak Conference on Wave and Quantum Aspects of Contemporary Optics. Proceedings of SPIE. Bellingham, USA: SPIE- The International Society for Optical Engineering, 2007. p. 660913 ( p.)ISBN: 978-08-1946-748- 5.
  Detail

  FICKER, T.; LEN, A.; CHMELIK, R.; LOVICAR, L.; MARTIŚEK, D.; NĚMEC, P.;. Fracture surfaces of porous materials. EUROPHYSICS LETTERS, 2007, vol. 80, no. 6, p. 1600-1605. ISSN: 0295- 5075.
  Detail

• 2006

  SPOUSTA, J.; URBÁNEK, M.; CHMELÍK, R.; BĚHOUNEK, T.; PLŠEK, R.; ŠIKOLA, T.; NAVRÁTIL, K. Vývoj zařízení k in-situ stanovení rozložení tlouštěk vrstev pomocí UV- VIS zobrazovací reflektometrie. 2006, vol. 51, no. 9, p. 239-245. ISSN: 0447- 6411.
  Detail

  CHMELÍK, R. Three-dimensional scalar imaging in high-aperture low- coherence interference and holographic microscopes. Journal of Modern Optics, 2006, vol. 53, no. 18, p. 2673-2689. ISSN: 0950- 0340.
  Detail

• 2005

  CHMELÍK, R. Konfokální holografická mikroskopie. In Mikroskopie 2005. Nové Město na Moravě: 2005.
  Detail

  CHMELÍK, R.; KOLMAN, P.; LOVICAR, L.; SUCHOMEL, F. Transmission Holographic Microscope - Image Characteristics. In 14th Slovak-Czech- Polish Conference on Wave and Quantum Aspects of Contemporary optics. Proceedings of SPIE. Bellingham, USA: SPIE- The International Society for Optical Engineering, 2005. p. 59450V- 1 (59450V-6 p.)ISBN: 0-8194-5951- 8.
  Detail

  KOLMAN, P.; CHMELÍK, R.; LOVICAR, L.; SUCHOMEL, F. Low- coherence interference microscope in transmission mode. In Focus on Microscopy 2005 - Jena, Germany. March 20-23, 2005. Appendix to the abstract book. Jena, Germany: 2005. p. 60-60.
  Detail

  CHMELÍK, R.; KOLMAN, P.; LOVICAR, L. Abstract of papers presented at Cytokinematics 2004 Sep 5-7 in Hradec Kralove, Czech Republic: Transmission holographic microscope. Proceedings of the Royal Microscopical Society, 2005, vol. 40, no. 1, p. 33-42. ISSN: 0035- 9017.
  Detail

  CHMELÍK, R.; LOVICAR, L.; KOLMAN, P.; SPOUSTA, J.; FORET, Z. Polychromatic coherent transfer function for a low- coherence interference microscope with achromatic fringes. In Focus on Microscopy 2005 - Jena, Germany. March 20-23, 2005. Appendix to the abstract book. Jena, Germany: 2005. p. 120-120.
  Detail

• 2004

  CHMELÍK, R., KOLMAN, P. Transmisní holografický mikroskop pro polychromatické světlo: návrh optické soustavy a vlastnosti zobrazení. Jemná mechanika a optika, 2004, vol. 49, no. 9, p. 248 ( p.)ISSN: 0447- 6441.
  Detail

  URBÁNEK, M.; SPOUSTA, J.; NAVRÁTIL, K.; SZOTKOWSKI, R.; CHMELÍK, R.; BUČEK, M.; ŠIKOLA, T. Instrument for thin film diagnostics by UV spectroscopic reflectometry. Surface and Interface Analysis, 2004, vol. 36, no. 8, p. 1102 ( p.)ISSN: 0142- 2421.
  Detail

• 2003

  URBÁNEK, M., SPOUSTA, J., NAVRÁTIL, K., FIEDOR, M., CHMELÍK, R., BUČEK, M., ŠIKOLA, T. Instrument for Thin Films Diagnostics by UV Spectroscopic Reflectometry. In ECASIA ' 03 Book of abstracts. Berlin: ECASIA, 2003. p. 284 ( p.)
  Detail

  CHMELÍK, R., LOVICAR, L., HARNA, Z. Surface profilometry by a holographic confocal microscopy. Optica Applicata, 2003, vol. 33, no. 2- 3, p. 381 ( p.)ISSN: 0078- 5466.
  Detail

  CHMELÍK, R., HARNA, Z., LOVICAR, L., ANTOŠOVÁ, I. Měření povrchů holografickým konfokálním mikroskopem. Jemná mechanika a optika, 2003, vol. 48, no. 6, p. 174 ( p.)ISSN: 0447- 6441.
  Detail

• 2002

  CHMELÍK, R.; HARNA, Z.; ANTOŠOVÁ, I.; LOVICAR, L.; MACHÁLEK, M.; ZLÁMALOVÁ, M. Holografická konfokální mikroskopie. In Mikroskopie 2002. Praha: Česká společnost pro vědeckou kinematografii, 2002. p. 7-13. ISBN: 80-01-02580- 2.
  Detail

  CHMELÍK, R., HARNA, Z. Surface profilometry by a parallel- mode confocal microscope. Optical Engineering, 2002, vol. 41, no. 4, p. 744 ( p.)ISSN: 0091- 3286.
  Detail

  CHMELÍK, R., LOVICAR, L., HARNA, Z. Surface profilometry by a holographic confocal microscopy. Abstracts, XIII Polish-Czech-Slovak Optical Conference, Wave and Quantum Aspects of Contemporary optics. Krzyzowa, Polsko: Institute of Physics , Wroclaw University of Technology, 2002. p. D1 ( p.)
  Detail

  SPOUSTA, J., ŠIKOLA, T., ZLÁMAL, J., URBÁNEK, M., NAVRÁTIL, K., JIRUŠE, J., CHMELÍK, R., NEBOJSA, A. In situ measurements of surface homogeneity of optical parameters of weakly absorbing thin films. Surface and Interface Analysis, 2002, vol. 34, no. 1, p. 664 ( p.)ISSN: 0142- 2421.
  Detail

• 2001

  SPOUSTA, J., URBÁNEK, M., ŠIKOLA, T., NEBOJSA, A., CHMELÍK, R., ZLÁMAL, J., JIRUŠE, J. In situ measurements of surface homogeneity of optical parameters of weakly absorbing thin films. In 9th European Conference on Applications of Surface and Interface Analysis (ECASIA'01) Book of Abstracts. Avignon, France: P. Marcus, A. Galtayries, N. Frémy, 2001. p. 295 ( p.)
  Detail

  CHMELÍK, R., HARNA, Z., MACHÁLEK, M., MATOUŠEK, M. Závislost osové odezvy holografického konfokálního mikroskopu na spektrální hustotě osvětlení. Jemná mechanika a optika, 2001, vol. 46, no. 4, p. 127 ( p.)ISSN: 0447- 6441.
  Detail

  CHMELÍK, R. Holographic confocal microscopy. Proceedings of SPIE, 2001, vol. 4356, no. 1, p. 118 ( p.)ISSN: 0277- 786X.
  Detail

  CHMELÍK, R. Holographic confocal microscopy. In Wave and Quantum Aspects of Contemporary Optics. Bellingham: SPIE - The International Society for Optical Engineering, 2001. p. 118 ( p.)ISBN: 0-8194- 4047.
  Detail

  CHMELÍK, R., HARNA, Z. Holografická konfokální mikroskopie– zdokonalená metoda optického studia povrchů. NDT Welding Bulletin, 2001, vol. 11, no. 3, p. 27 ( p.)ISSN: 1213- 3825.
  Detail

  URBÁNEK, M., SPOUSTA, J., ŠIKOLA, T., ZLÁMAL, J., CHMELÍK, R., HARNA, Z., JIRUŠE, J., JÁKL, M. In situ plošné monitorování optických parametrů tenkých vrstev. Jemná mechanika a optika, 2001, vol. 46, no. 4, p. 143 ( p.)ISSN: 0447- 6441.
  Detail

• 2000

  CHMELÍK, R., HARNA, Z. Three- Dimensional Theory of Phase Imaging in a Holographic Confocal Microscopy. In Focus on Microscopy 2000. Shirahama, Japan: Society for Laser Microscopy, Japan, 2000. p. 65 ( p.)
  Detail

  URBÁNEK, M., ŠIKOLA, T., SPOUSTA, J., CHMELÍK, R., LOPOUR, F., ZLÁMAL, J., JIRUŠE, J. Zařízení k in situ sledování plošné homogenity růstu tenkých neabsorbujících vrstev. In Sborník abstraktů přednášek konference Optické vlastnosti pevných látek v základním výzkum a aplikacích. Brno: MU Brno, 2000. p. 17 ( p.)
  Detail

  URBÁNEK, M., ŠIKOLA, T., NEBOJSA, A., SPOUSTA, J., DITTRICHOVÁ, L., CHMELÍK, R., ZLÁMAL, J., JIRUŠE, J. Monitoring of surface homogeneity of optical parameters of thin films. In Micromat 2000. Berlin: Editors: B. Michel, T. Winkler, M. Werner,H. Fecht, 2000. p. 604 ( p.)
  Detail

• 1999

  CHMELÍK, R., HARNA, Z. Parallel- Mode Confocal Microscopy. Optical Engineering, 1999, vol. 38, no. 10, p. 1635 ( p.)ISSN: 0091- 3286.
  Detail

  CHMELÍK, R., HARNA, Z. Přenos prostorových frekvencí holografickým konfokálním mikroskopem. Jemná mechanika a optika, 1999, vol. 44, no. 11- 12, p. 348 ( p.)ISSN: 0447- 6441.
  Detail

  CHMELÍK, R., HARNA, Z., MATOUŠEK, M. Holographic Confocal Microscopy. In Focus on Microscopy 1999. Heidelberg: EMBL, Heidelberg, Germany, 1999. p. 93 ( p.)
  Detail

• 1998

  CHMELÍK, R., HARNA, Z. Parallel- Mode Confocal Microscopy. Proceedings of SPIE, 1998, vol. 3568, p. 101 ( p.)ISSN: 0277- 786X.
  Detail

  CHMELÍK, R., HARNA, Z. Holographic confocal microscopy as a new surface- profiling tool. Kovové materiály, 1998, vol. 36, no. 3- S, p. 33 ( p.)ISSN: 0023- 432X.
  Detail

• 1996

  CHMELÍK, R. Analytic description of wave fields in focal regions of diffractive lenses. Journal of Modern Optics, 1996, vol. 43, no. 7, p. 1463 ( p.)ISSN: 0950- 0340.
  Detail

• 1994

  CHMELÍK, R. Focusing and the optical transfer function in a rotationally symmetric optical system. Applied Optics, 1994, vol. 33, no. 17, p. 3702 ( p.)ISSN: 0003- 6935.
  Detail

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